SCOPe 2.08: Structural Classification of Proteins

PDB entry 4mbz

View 4mbz on RCSB PDB site
Description: Structure of B-Lymphotropic Polyomavirus VP1 in complex with 3'-sialyllactosamine
Class: viral protein
Keywords: jelly roll, Polyomavirus, viral capsid (structural) protein, DNA encapsidation, receptor binding, Sialylated oligosaccharides, VIRAL PROTEIN
Deposited on 2013-08-21, released 2013-12-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBZ (Start-277)
Domains in SCOPe 2.08: d4mbza1, d4mbza2
Chain 'B':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBZ
Domains in SCOPe 2.08: d4mbzb1, d4mbzb2
Chain 'C':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBZ
Domains in SCOPe 2.08: d4mbzc1, d4mbzc2
Chain 'D':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBZ
Domains in SCOPe 2.08: d4mbzd1, d4mbzd2
Chain 'E':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBZ (Start-277)
Domains in SCOPe 2.08: d4mbze1, d4mbze2
Chain 'F':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBZ
Domains in SCOPe 2.08: d4mbzf1, d4mbzf2
Chain 'G':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBZ
Domains in SCOPe 2.08: d4mbzg1, d4mbzg2
Chain 'H':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBZ
Domains in SCOPe 2.08: d4mbzh1, d4mbzh2
Chain 'I':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBZ
Domains in SCOPe 2.08: d4mbzi1, d4mbzi2
Chain 'J':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBZ (0-End)
Domains in SCOPe 2.08: d4mbzj1, d4mbzj2
Heterogens: CA, CL, EDO, IPA, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>4mbzA (A:)
gshmggvevlevrtgpdaitqieaylnprmgnnipsedlygysnsintafskasdtpnkd
tlpcysvaviklpllnedmtcdtilmweavsvktevvgisslvnlhqggkyiygsssgcv
pvqgttyhmfavggeplelqglvasstatypddvvaiknmkpgnqgldpkakalldkdgk
ypvevwcpdpsknentryygsftggattppvmqftnsvttvlldengvgplckgdklfls
cadiagvhtnysetqvwrglpryfnvtlrkrivknpyp