SCOPe 2.08: Structural Classification of Proteins

PDB entry 4mbx

View 4mbx on RCSB PDB site
Description: Structure of unliganded B-Lymphotropic Polyomavirus VP1
Class: viral protein
Keywords: jelly roll, polyomavirus, viral capsid (structural) protein, DNA encapsidation, receptor binding, Sialylated oligosaccharides, Viral Coat Protein, VIRAL PROTEIN
Deposited on 2013-08-21, released 2013-12-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-01-22, with a file datestamp of 2014-01-17.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: 0.167
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBX (Start-277)
Domains in SCOPe 2.08: d4mbxa1, d4mbxa2
Chain 'B':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBX
Domains in SCOPe 2.08: d4mbxb1, d4mbxb2
Chain 'C':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBX
Domains in SCOPe 2.08: d4mbxc1, d4mbxc2
Chain 'D':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBX
Domains in SCOPe 2.08: d4mbxd1, d4mbxd2
Chain 'E':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBX (Start-277)
Domains in SCOPe 2.08: d4mbxe1, d4mbxe2
Chain 'F':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBX
Domains in SCOPe 2.08: d4mbxf1, d4mbxf2
Chain 'G':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBX
Domains in SCOPe 2.08: d4mbxg1, d4mbxg2
Chain 'H':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBX
Domains in SCOPe 2.08: d4mbxh1, d4mbxh2
Chain 'I':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBX
Domains in SCOPe 2.08: d4mbxi1, d4mbxi2
Chain 'J':
Compound: Major capsid protein VP1
Species: B-lymphotropic polyomavirus [TaxId:332091]
Gene: VP1
Database cross-references and differences (RAF-indexed):
- PDB 4MBX
Domains in SCOPe 2.08: d4mbxj1, d4mbxj2
Heterogens: CA, EDO, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>4mbxA (A:)
gshmggvevlevrtgpdaitqieaylnprmgnnipsedlygysnsintafskasdtpnkd
tlpcysvaviklpllnedmtcdtilmweavsvktevvgisslvnlhqggkyiygsssgcv
pvqgttyhmfavggeplelqglvasstatypddvvaiknmkpgnqgldpkakalldkdgk
ypvevwcpdpsknentryygsftggattppvmqftnsvttvlldengvgplckgdklfls
cadiagvhtnysetqvwrglpryfnvtlrkrivknpyp