PDB entry 4m63

View 4m63 on RCSB PDB site
Description: Crystal Structure of a Filament-Like Actin Trimer Bound to the Bacterial Effector VopL
Class: actin-binding protein
Keywords: actin nucleator, actin nucleation, HYDROLASE, WASP Homology 2 domain, VopL C-terminal domain, cytoskeleton, ATP-binding protein, ACTIN-BINDING PROTEIN
Deposited on 2013-08-08, released 2013-10-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T3SS2 effector VopL nucleation of actin polymerization
    Species: Vibrio parahaemolyticus [TaxId:1211705]
    Gene: VopL, VPBB_A1249
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: T3SS2 effector VopL nucleation of actin polymerization
    Species: Vibrio parahaemolyticus [TaxId:1211705]
    Gene: VopL, VPBB_A1249
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Actin-5C
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: 5C-actin, Act5C, CG4027
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10987
      • engineered mutation (287-289)
      • expression tag (287)
    Domains in SCOPe 2.08: d4m63c1, d4m63c2
  • Chain 'D':
    Compound: Actin-5C
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: 5C-actin, Act5C, CG4027
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10987
      • engineered mutation (287-289)
      • expression tag (287)
    Domains in SCOPe 2.08: d4m63d1, d4m63d2
  • Chain 'E':
    Compound: Actin-5C
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: 5C-actin, Act5C, CG4027
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10987
      • engineered mutation (287-289)
      • expression tag (287)
    Domains in SCOPe 2.08: d4m63e1, d4m63e2
  • Heterogens: ATP, CA

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4m63C (C:)
    gmcdeevaalvvdngsgmckagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
    qskrgiltlkypiehgivtnwddmekiwhhtfynelrvapeehpvllteaplnpkanrek
    mtqimfetfntpamyvaiqavlslyasgrttgivldsgdgvshtvpiyegyalphailrl
    dlagrdltdylmkiltergysftttaereivrdikeklcyvaldfeqemataasssslek
    syelpdgqvitignerfrcpealfqpsflgmeacgihettynsimkcaaairkdlyantv
    lsggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwis
    kqeydesgpsivhrkcf
    

    Sequence, based on observed residues (ATOM records): (download)
    >4m63C (C:)
    aalvvdngsgmckagfagddapravfpsivgrprhqgvkdsyvgdeaqskrgiltlkypi
    ehgivtnwddmekiwhhtfynelrvapeehpvllteaplnpkanrekmtqimfetfntpa
    myvaiqavlslyasgrttgivldsgdgvshtvpiyegyalphailrldlagrdltdylmk
    iltergysftttaereivrdikeklcyvaldfeqemataassssleksyelpdgqvitig
    nerfrcpealfqpsflgmeacgihettynsimkcaaairkdlyantvlsggttmypgiad
    rmqkeitalapstikiiapperkysvwiggsilaslstfqqmwiskqeydesgpsivhrk
    c
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4m63D (D:)
    gmcdeevaalvvdngsgmckagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
    qskrgiltlkypiehgivtnwddmekiwhhtfynelrvapeehpvllteaplnpkanrek
    mtqimfetfntpamyvaiqavlslyasgrttgivldsgdgvshtvpiyegyalphailrl
    dlagrdltdylmkiltergysftttaereivrdikeklcyvaldfeqemataasssslek
    syelpdgqvitignerfrcpealfqpsflgmeacgihettynsimkcaaairkdlyantv
    lsggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwis
    kqeydesgpsivhrkcf
    

    Sequence, based on observed residues (ATOM records): (download)
    >4m63D (D:)
    vaalvvdngsgmckagfagddapravfpsivgrprhkdsyvgdeaqskrgiltlkypieh
    givtnwddmekiwhhtfynelrvapeehpvllteaplnpkanrekmtqimfetfntpamy
    vaiqavlslyasgrttgivldsgdgvshtvpiyegyalphailrldlagrdltdylmkil
    tergysftttaereivrdikeklcyvaldfeqemataassssleksyelpdgqvitigne
    rfrcpealfqpsflgmeacgihettynsimkcaaairkdlyantvlsggttmypgiadrm
    qkeitalapstmkikiiapperkysvwiggsilaslstfqqmwiskqeydesgpsivhrk
    c
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4m63E (E:)
    gmcdeevaalvvdngsgmckagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
    qskrgiltlkypiehgivtnwddmekiwhhtfynelrvapeehpvllteaplnpkanrek
    mtqimfetfntpamyvaiqavlslyasgrttgivldsgdgvshtvpiyegyalphailrl
    dlagrdltdylmkiltergysftttaereivrdikeklcyvaldfeqemataasssslek
    syelpdgqvitignerfrcpealfqpsflgmeacgihettynsimkcaaairkdlyantv
    lsggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwis
    kqeydesgpsivhrkcf
    

    Sequence, based on observed residues (ATOM records): (download)
    >4m63E (E:)
    aalvvdngsgmckagfagddapravfpsivgrpgdeaqskrgilypiehgivtnwddmek
    iwhhtfynelrvapeehpvllteaplnpkanrekmtqimfetfntpamyvaiqavlslya
    sgrttgivldsgdgvshtvpiyegyalphailrldlagrdltdylmkiltergysfttta
    ereivrdikeklcyvaldfeqemataassssleksyelpdgqvitignerfrcpealfqp
    sflgmeacgihettynsimkcaaairkdlyantvlsggttmypgiadrmqkeitalapst
    mkikiiapperkysvwiggsilaslstfqqmwiskqeydesgpsivhrkc