PDB entry 4m5y

View 4m5y on RCSB PDB site
Description: Crystal structure of broadly neutralizing Fab 5J8
Class: immune system
Keywords: immunoglobulin fold, fragment antigen binding, influenza hemagglutinin receptor binding site, IMMUNE SYSTEM
Deposited on 2013-08-08, released 2013-09-25
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-11-06, with a file datestamp of 2013-11-01.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: 0.173
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: Fab 5J8 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4M5Y (0-End)
  • Chain 'I':
    Compound: Fab 5J8 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4M5Y (0-End)
  • Chain 'L':
    Compound: Fab 5J8 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4M5Y (0-End)
    Domains in SCOPe 2.05: d4m5yl1, d4m5yl2
  • Chain 'M':
    Compound: Fab 5J8 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4M5Y (0-End)
    Domains in SCOPe 2.05: d4m5ym1, d4m5ym2
  • Heterogens: PEG, PG4, HOH

PDB Chain Sequences:

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4m5yL (L:)
syvltqppsvsvapgetariscggnnigtkvlhwyqqtpgqapvlvvyddsdrpsgiper
fsgsnsgntatltisrvevgdeadyycqvwdistdqavfgggtkltvlgqpkaapsvtlf
ppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyl
sltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >4m5yL (L:)
syvltqppsvsvapgetariscggnnigtkvlhwyqqtpgqapvlvvyddsdrpsgiper
fsgsnsgntatltisrvevgdeadyycqvwdistdqavfgggtkltvlgqpkaapsvtlf
ppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyl
sltpeqwkshrsyscqvthegstvektvapt

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >4m5yM (M:)
syvltqppsvsvapgetariscggnnigtkvlhwyqqtpgqapvlvvyddsdrpsgiper
fsgsnsgntatltisrvevgdeadyycqvwdistdqavfgggtkltvlgqpkaapsvtlf
ppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyl
sltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >4m5yM (M:)
syvltqppsvsvapgetariscggnnigtkvlhwyqqtpgqapvlvvyddsdrpsgiper
fsgsnsgntatltisrvevgdeadyycqvwdistdqavfgggtkltvlgqpkaapsvtlf
ppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyl
sltpeqwkshrsyscqvthegstvektvapt