PDB entry 4m59

View 4m59 on RCSB PDB site
Description: Crystal structure of the pentatricopeptide repeat protein PPR10 in complex with an 18-nt psaJ RNA element
Deposited on 2013-08-08, released 2013-10-30
The last revision was dated 2013-12-18, with a file datestamp of 2013-12-13.
Experiment type: XRAY
Resolution: 2.46 Å
R-factor: 0.261
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Chloroplast pentatricopeptide repeat protein 10
    Species: Zea mays [TaxId:4577]
    Gene: ppr10, ZEAMMB73_867042
    Database cross-references and differences (RAF-indexed):
    • Uniprot B8Y6I0
      • engineered mutation (187)
      • engineered mutation (210)
      • engineered mutation (361)
      • engineered mutation (380)
  • Chain 'B':
    Compound: Chloroplast pentatricopeptide repeat protein 10
    Species: Zea mays [TaxId:4577]
    Gene: ppr10, ZEAMMB73_867042
    Database cross-references and differences (RAF-indexed):
    • Uniprot B8Y6I0
      • engineered mutation (187)
      • engineered mutation (210)
      • engineered mutation (361)
      • engineered mutation (380)
  • Chain 'C':
    Compound: psaJ RNA
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: psaJ RNA
    Species: synthetic, synthetic
  • Heterogens: PO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4m59A (A:)
hsflspdaqvlvlaisshplptlaaflasrrdellraditsllkalelsghwewalallr
wagkegaadasalemvvralgregqhdavcalldetplppgsrldvrayttvlhalsrag
ryeralelfaelrrqgvaptlvtynvvldvygrmgrswprivalldemraagvepdgfta
stviaacsrdglvdeavaffedlkarghapsvvtynallqvfgkagnytealrvlgemeq
ngcqpdavtynelagtyaragffeeaarcldtmaskgllpnaftyntvmtaygnvgkvde
alalfdqmkktgfvpnvntynlvlgmlgkksrftvmlemlgemsrsgctpnrvtwntmla
vsgkrgmedyvtrvlegmrssgvelsrdtyntliaaygrcgsrtnafkmynemtsagftp
cittynallnvlsrqgdwstaqsivskmrtkgfkpneqsyslllqcyakggnvagiaaie
nevygsgavfpswvilrtlvianfkcrrldgmetafqevkargynpdlvifnsmlsiyak
ngmyskatevfdsikrsglspdlitynslmdmyakcsesweaekilnqlkcsqtmkpdvv
syntvingfckqglvkeaqrvlsemvadgmapcavtyhtlvggysslemfsearevigym
vqhglkpmeltyrrvvesycrakrfeeargflsevsetdldfdkkaleayiedaqfgr

    Sequence, based on observed residues (ATOM records):
    >4m59A (A:)
pdaqvlvlaisshplptlaaflasrrdellraditsllkalelsghwewalallrwagke
gaadasalemvvralgregqhdavcalldetplppgsrldvrayttvlhalsragryera
lelfaelrrqgvaptlvtynvvldvygrmgrswprivalldemraagvepdgftastvia
acsrdglvdeavaffedlkarghapsvvtynallqvfgkagnytealrvlgemeqngcqp
davtynelagteeaarcldtmaspnaftyntvmtaygnvgkvdealalfdqmkktgfvpn
vntynlvlgmlgkksrftvmlemlgemsrsgctpnrvtwntmlavsgkrgmedyvtrvle
gmrssgvelsrdtyntliaaygrcgsrtnafkmynemtsagftpcittynallnvlsrqg
dwstaqsivskmrtkgfkpneqsyslllqcyakggnvagiaaienevygsgavfpswvil
rtlvianfkcrrldgmetafqevkargynpdlvifnsmlsiyakngmyskatevfdsikr
sglspdlitynslmdmyakcsesweaekilnqlkcsqtmkpdvvsyntvingfckqglvk
eaqrvlsemvadgmapcavtyhtlvggysslemfsearevigymvqhglkpmeltyrrvv
esycrafeeargflsevkaleayieda

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4m59B (B:)
hsflspdaqvlvlaisshplptlaaflasrrdellraditsllkalelsghwewalallr
wagkegaadasalemvvralgregqhdavcalldetplppgsrldvrayttvlhalsrag
ryeralelfaelrrqgvaptlvtynvvldvygrmgrswprivalldemraagvepdgfta
stviaacsrdglvdeavaffedlkarghapsvvtynallqvfgkagnytealrvlgemeq
ngcqpdavtynelagtyaragffeeaarcldtmaskgllpnaftyntvmtaygnvgkvde
alalfdqmkktgfvpnvntynlvlgmlgkksrftvmlemlgemsrsgctpnrvtwntmla
vsgkrgmedyvtrvlegmrssgvelsrdtyntliaaygrcgsrtnafkmynemtsagftp
cittynallnvlsrqgdwstaqsivskmrtkgfkpneqsyslllqcyakggnvagiaaie
nevygsgavfpswvilrtlvianfkcrrldgmetafqevkargynpdlvifnsmlsiyak
ngmyskatevfdsikrsglspdlitynslmdmyakcsesweaekilnqlkcsqtmkpdvv
syntvingfckqglvkeaqrvlsemvadgmapcavtyhtlvggysslemfsearevigym
vqhglkpmeltyrrvvesycrakrfeeargflsevsetdldfdkkaleayiedaqfgr

    Sequence, based on observed residues (ATOM records):
    >4m59B (B:)
lspdaqvlvlaisshplptlaaflasrrdellraditsllkalelsghwewalallrwag
kegaadasalemvvralgregqhdavcalldetplppgsrldvrayttvlhalsragrye
ralelfaelrrqgvaptlvtynvvldvygrmgrswprivalldemraagvepdgftastv
iaacsrdglvdeavaffedlkarghapsvvtynallqvfgkaealrvlgemeqngpdavt
ynelagtyaragffeeaarcldtmaftyntvmtaygnvgkvdealalfdqmkktgfvpnv
ntynlvlgmlgkksrftvmlemlgemsrsgctpnrvtwntmlavsgkrgmedyvtrvleg
mrssgvelsrdtyntliaaygrcgsrtnafkmynemtsagftpcittynallnvlsrqgd
wstaqsivskmrtkgfkpneqsyslllqcyakggnvagiaaienevyvfpswvilrtlvi
anfkcrrldgmetafqevkargynpdlvifnsmlsiyakngmyskatevfdsikrsglsp
dlitynslmdmyakcsesweaekilnqlkcsqtmkpdvvsyntvingfckqglvkeaqrv
lsemvadgmapcavtyhtlvggysslemfsearevigymvqhglkpmeltyrrvvesycr
akrfeeargflkaleayiedaqf

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.