PDB entry 4m4y
View 4m4y on RCSB PDB site
Description: Crystal structure of a 2009 H1N1 influenza virus hemagglutinin with a stabilization mutation HA2 E47G
Class: viral protein
Keywords: viral envelope protein, viral fusion protein, stabilization mutant, VIRAL PROTEIN
Deposited on
2013-08-07, released
2013-09-25
The last revision prior to the SCOPe 2.03 freeze date was dated
2013-11-06, with a file datestamp of
2013-11-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.182
AEROSPACI score: 0.33
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hemagglutinin HA1 subunit
Species: Influenza A virus [TaxId:641501]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4m4ya_ - Chain 'B':
Compound: Hemagglutinin HA2 subunit
Species: Influenza A virus [TaxId:641501]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot C3W5S1 (0-173)
- engineered mutation (46)
- expression tag (174)
- Chain 'C':
Compound: Hemagglutinin HA1 subunit
Species: Influenza A virus [TaxId:641501]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4m4yc_ - Chain 'D':
Compound: Hemagglutinin HA2 subunit
Species: Influenza A virus [TaxId:641501]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Hemagglutinin HA1 subunit
Species: Influenza A virus [TaxId:641501]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4m4ye_ - Chain 'F':
Compound: Hemagglutinin HA2 subunit
Species: Influenza A virus [TaxId:641501]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4m4yA (A:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadtyvfvgssryskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnipsiqsr
Sequence, based on observed residues (ATOM records): (download)
>4m4yA (A:)
gdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpstsadqqslyqnadtyvfvgssryskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnips
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4m4yC (C:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadtyvfvgssryskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnipsiqsr
Sequence, based on observed residues (ATOM records): (download)
>4m4yC (C:)
gdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpstsadqqslyqnadtyvfvgssryskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnip
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>4m4yE (E:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadtyvfvgssryskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnipsiqsr
Sequence, based on observed residues (ATOM records): (download)
>4m4yE (E:)
dpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcni
agwilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfeif
pktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlw
gihhpstsadqqslyqnadtyvfvgssryskkfkpeiairpkvrdqegrmnyywtlvepg
dkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihp
itigkcpkyvkstklrlatglrnips
- Chain 'F':
No sequence available.