PDB entry 4m4d

View 4m4d on RCSB PDB site
Description: Crystal structure of lipopolysaccharide binding protein
Class: lipid binding protein
Keywords: beta barrel, immune response, lipopolysaccharide, blood, LIPID BINDING PROTEIN
Deposited on 2013-08-07, released 2013-10-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.91 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lipopolysaccharide-binding protein
    Species: Mus musculus [TaxId:10090]
    Gene: Lbp
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4m4da1, d4m4da2
  • Chain 'B':
    Compound: Lipopolysaccharide-binding protein
    Species: Mus musculus [TaxId:10090]
    Gene: Lbp
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4m4db1, d4m4db2
  • Heterogens: NAG, PC1

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4m4dA (A:)
adlgvnpgvvaritdkglayaakeglvalqrelykitlpdfsgdfkikavgrgqyefhsl
eiqncelrgsslkllpgqglslaisdssigvrgkwkvrksflklhgsfdldvkgvtisvd
lllgmdpsgrptvsasgcssricdldvhisgnvgwllnlfhnqiesklqkvlenkvcemi
qksvtsdlqpylqtlpvtaeidnvlgidyslvaapqakaqvldvmfkgeifnrnhrspva
tptptmslpedskqmvyfaisdyafniasrvyhqagylnfsitddmlphdsgirlntkaf
rpftpqiykkypdmklellgtvvsapilnvspgnlslapqmeiegfvilptsarepvfrl
gvvtnvfasltfnnskvtgmlhpdkaqvrlieskvgmfnvnlfqaflnyyllnslypdvn
aelaqgfplplprhiqlhdldfqirkdflylganvqymrvsgrlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >4m4dA (A:)
vnpgvvaritdkglayaakeglvalqrelykitlpdfsgdfkikavgrgqyefhsleiqn
celrgsslkllpgqglslaisdssigvrgkwkvrksflklhgsfdldvkgvtisvdlllg
mdpsgrptvsasgcssricdldvhisgnvgwllnlfhnqiesklqkvlenkvcemiqksv
tsdlqpylqtlpvtaeidnvlgidyslvaapqakaqvldvmfkgeifnrnhrspvatptp
tmslpedskqmvyfaisdyafniasylnfsitddmlphdsgirlntkafrpftpqiykky
pdmklellgtvvsapilnvspgnlslapqmeiegfvilptsarepvfrlgvvtnvfaslt
fnnskvtgmlhpdkaqvrlieskvgmfnvnlfqaflnyyllnslypdvnaelaqgfplpl
prhiqlhdldfqirkdflylganvqymr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4m4dB (B:)
adlgvnpgvvaritdkglayaakeglvalqrelykitlpdfsgdfkikavgrgqyefhsl
eiqncelrgsslkllpgqglslaisdssigvrgkwkvrksflklhgsfdldvkgvtisvd
lllgmdpsgrptvsasgcssricdldvhisgnvgwllnlfhnqiesklqkvlenkvcemi
qksvtsdlqpylqtlpvtaeidnvlgidyslvaapqakaqvldvmfkgeifnrnhrspva
tptptmslpedskqmvyfaisdyafniasrvyhqagylnfsitddmlphdsgirlntkaf
rpftpqiykkypdmklellgtvvsapilnvspgnlslapqmeiegfvilptsarepvfrl
gvvtnvfasltfnnskvtgmlhpdkaqvrlieskvgmfnvnlfqaflnyyllnslypdvn
aelaqgfplplprhiqlhdldfqirkdflylganvqymrvsgrlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >4m4dB (B:)
vnpgvvaritdkglayaakeglvalqrelykitlpdfsgdfkikavgrgqyefhsleiqn
celrgsslkllpgqglslaisdssigvrgkwkvrksflklhgsfdldvkgvtisvdlllg
mdpsgrptvsasgcssricdldvhisgnvgwllnlfhnqiesklqkvlenkvcemiqksv
tsdlqpylqtlpvtaeidnvlgidyslvaapqakaqvldvmfkgeifnhrspvatptptm
slpedskqmvyfaisdyaylnfsitddmlphdsgirlntkafrpftpqiykkypdmklel
lgtvvsapilnvspgnlslapqmeiegfvilptsarepvfrlgvvtnvfasltfnnskvt
gmlhpdkaqvrlieskvgmfnvnlfqaflnyyllnslypdvnaelaqgfplplprhiqlh
dldfqirkdflylganvqymrv