PDB entry 4m1u

View 4m1u on RCSB PDB site
Description: The crystal structure of Stx2 and a disaccharide ligand
Class: hydrolase
Keywords: rRNA N-glycosylase, HYDROLASE
Deposited on 2013-08-04, released 2013-11-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.56 Å
R-factor: N/A
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Shiga toxin 2 A-subunit
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: ECs1205, stx 2 A-subunit, stx2 A-subunit, stx2A, Z1464
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4m1ua_
  • Chain 'B':
    Compound: Shiga toxin 2 B subunit
    Species: Escherichia coli [TaxId:562]
    Gene: stx2B, stx2dB, stx2vB, stxB2, stxII, vtx2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4m1ub_
  • Chain 'C':
    Compound: Shiga toxin 2 B subunit
    Species: Escherichia coli [TaxId:562]
    Gene: stx2B, stx2dB, stx2vB, stxB2, stxII, vtx2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4m1uc_
  • Chain 'D':
    Compound: Shiga toxin 2 B subunit
    Species: Escherichia coli [TaxId:562]
    Gene: stx2B, stx2dB, stx2vB, stxB2, stxII, vtx2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4m1ud_
  • Chain 'E':
    Compound: Shiga toxin 2 B subunit
    Species: Escherichia coli [TaxId:562]
    Gene: stx2B, stx2dB, stx2vB, stxB2, stxII, vtx2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4m1ue_
  • Chain 'F':
    Compound: Shiga toxin 2 B subunit
    Species: Escherichia coli [TaxId:562]
    Gene: stx2B, stx2dB, stx2vB, stxB2, stxII, vtx2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4m1uf_
  • Heterogens: 1PS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4m1uA (A:)
reftidfstqqsyvsslnsirteistplehisqgttsvsvinhtppgsyfavdirgldvy
qarfdhlrliieqnnlyvagfvntatntfyrfsdfthisvpgvttvsmttdssyttlqrv
aalersgmqisrhslvssylalmefsgntmtrdasravlrfvtvtaealrfrqiqrefrq
alsetapvytmtpgdvdltlnwgrisnvlpeyrgedgvrvgrisfnnisailgtvaviln
chhqgarsvravneesqpecqitgdrpvikinntlwesntaaaflnrksqflyttgk

    Sequence, based on observed residues (ATOM records): (download) 
    >4m1uA (A:)
reftidfstqqsyvsslnsirteistplehisqgttsvsvinhtppgsyfavdirgldvy
qarfdhlrliieqnnlyvagfvntatntfyrfsdfthisvpgvttvsmttdssyttlqrv
aalersgmqisrhslvssylalmefsgntmtrdasravlrfvtvtaealrfrqiqrefrq
alsetapvytmtpgdvdltlnwgrisnvlpeyrgedgvrvgrisfnnisailgtvaviln
checqitgdrpvikinntlwesntaaaflnrksqflyttgk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4m1uB (B:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4m1uC (C:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4m1uD (D:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4m1uE (E:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4m1uF (F:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd