PDB entry 4m0v

View 4m0v on RCSB PDB site
Description: Crystal structure of E.coli SbcD with Mn2+
Deposited on 2013-08-02, released 2014-02-26
The last revision was dated 2014-02-26, with a file datestamp of 2014-02-21.
Experiment type: XRAY
Resolution: 1.83 Å
R-factor: 0.164
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Exonuclease subunit SbcD
    Species: Escherichia coli [TaxId:595495]
    Gene: sbcD, EKO11_3451, KO11_21615
    Database cross-references and differences (RAF-indexed):
    • Uniprot E8Y9D8 (14-353)
      • expression tag (11-13)
  • Chain 'B':
    Compound: Exonuclease subunit SbcD
    Species: Escherichia coli [TaxId:595495]
    Gene: sbcD, EKO11_3451, KO11_21615
    Database cross-references and differences (RAF-indexed):
    • Uniprot E8Y9D8 (14-353)
      • expression tag (12-13)
  • Chain 'C':
    Compound: Exonuclease subunit SbcD
    Species: Escherichia coli [TaxId:595495]
    Gene: sbcD, EKO11_3451, KO11_21615
    Database cross-references and differences (RAF-indexed):
    • Uniprot E8Y9D8 (14-353)
      • expression tag (9-13)
  • Chain 'D':
    Compound: Exonuclease subunit SbcD
    Species: Escherichia coli [TaxId:595495]
    Gene: sbcD, EKO11_3451, KO11_21615
    Database cross-references and differences (RAF-indexed):
    • Uniprot E8Y9D8 (14-353)
      • expression tag (9-13)
  • Heterogens: GOL, MN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4m0vA (A:)
mshhhhhhsmdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiiva
gdvfdtgsppsyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvva
saghapqilprrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhya
dacklrgdqplpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihra
qiiggmehvrycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdl
asitaqleqwrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

    Sequence, based on observed residues (ATOM records):
    >4m0vA (A:)
iefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiivagdvfdtgspps
yartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvvasaghapqilpr
rdgtpgavlcpipflrprdiitsqekqqhllaaitdyyqqhyadacklrgdqplpiiatg
hlttvgasksdavrdiyigtldafpaqnfppadyialghihraqiiggmehvrycgspip
lsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdlasitaqleqqeppvwld
ieittdeylhdiqrkiqalteslpvevllvrr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4m0vB (B:)
mshhhhhhsmdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiiva
gdvfdtgsppsyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvva
saghapqilprrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhya
dacklrgdqplpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihra
qiiggmehvrycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdl
asitaqleqwrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

    Sequence, based on observed residues (ATOM records):
    >4m0vB (B:)
efmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiivagdvfdtgsppsy
artlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvvasaghapqilprr
dgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhyadacklrgdqplp
iiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihraqiiggmehvryc
gspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdlasitaqleqwrd
vsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4m0vC (C:)
mshhhhhhsmdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiiva
gdvfdtgsppsyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvva
saghapqilprrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhya
dacklrgdqplpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihra
qiiggmehvrycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdl
asitaqleqwrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

    Sequence, based on observed residues (ATOM records):
    >4m0vC (C:)
mdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiivagdvfdtgsp
psyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvvasaghapqil
prrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhyadacklrgdq
plpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihraqiiggmehv
rycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdlasitaqleq
wrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4m0vD (D:)
mshhhhhhsmdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiiva
gdvfdtgsppsyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvva
saghapqilprrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhya
dacklrgdqplpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihra
qiiggmehvrycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdl
asitaqleqwrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

    Sequence, based on observed residues (ATOM records):
    >4m0vD (D:)
mdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiivagdvfdtgsp
psyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvvasaghapqil
prrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhyadacklrgdq
plpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihraqiiggmehv
rycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdlasitaqleq
wrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr