PDB entry 4lzw

View 4lzw on RCSB PDB site
Description: X-ray structure uridine phosphorylase from Vibrio cholerae in complex with thymidine at 1.29 A resolution
Class: transferase
Keywords: Rossmann Fold, Transferase, cytoplasmic
Deposited on 2013-08-01, released 2014-12-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-12-28, with a file datestamp of 2016-12-22.
Experiment type: XRAY
Resolution: 1.29 Å
R-factor: N/A
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lzwa_
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lzwb_
  • Chain 'C':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lzwc_
  • Chain 'D':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lzwd_
  • Chain 'E':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lzwe_
  • Chain 'F':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lzwf_
  • Heterogens: THM, EOH, CL, NA, MG, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4lzwA (A:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4lzwA (A:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipetearsikvvveaa
rkmlk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4lzwB (B:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4lzwB (B:)
tktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsv
vvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslh
fapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqg
smkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsi
kvvveaarkmlk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4lzwC (C:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4lzwC (C:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4lzwD (D:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4lzwD (D:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4lzwE (E:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4lzwE (E:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4lzwF (F:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4lzwF (F:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipetearsikvvveaa
rkmlk