PDB entry 4lyk

View 4lyk on RCSB PDB site
Description: Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in complex with activating cofactor Mg++
Deposited on 2013-07-31, released 2014-01-29
The last revision was dated 2014-05-14, with a file datestamp of 2014-05-09.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.19
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cyclic di-GMP phosphodiesterase YahA
    Species: Escherichia coli [TaxId:83333]
    Gene: b0315, JW0307, yahA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Cyclic di-GMP phosphodiesterase YahA
    Species: Escherichia coli [TaxId:83333]
    Gene: b0315, JW0307, yahA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Cyclic di-GMP phosphodiesterase YahA
    Species: Escherichia coli [TaxId:83333]
    Gene: b0315, JW0307, yahA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Cyclic di-GMP phosphodiesterase YahA
    Species: Escherichia coli [TaxId:83333]
    Gene: b0315, JW0307, yahA
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, HB0, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4lykA (A:)
mhhhhhhssglvprgshdnhyhhivtpeaislalenhefkpwiqpvfcaqtgvltgcevl
vrwehpqtgiippdqfiplaessglivimtrqlmkqtadilmpvkhllpdnfhiginvsa
gcflaagfekeclnlvnklgndkiklvlelternpipvtpearaifdslhqhnitfaldd
fgtgyatyrylqafpvdfikidksfvqmasvdeisghivdnivelarkpglsivaegvet
qeqadlmigkgvhflqgylysppvpgnkfisewvmkagg

    Sequence, based on observed residues (ATOM records):
    >4lykA (A:)
ivtpeaislalenhefkpwiqpvfcaqtgvltgcevlvrwehpqtgiippdqfiplaess
glivimtrqlmkqtadilmpvkhllpdnfhiginvsagcflaagfekeclnlvnklgndk
iklvlelternpipvtpearaifdslhqhnitfalddfgtgyatyrylqafpvdfikidk
sfvqmasvdeisghivdnivelarkpglsivaegvetqeqadlmigkgvhflqgylyspp
vpgnkfisewvmk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4lykB (B:)
mhhhhhhssglvprgshdnhyhhivtpeaislalenhefkpwiqpvfcaqtgvltgcevl
vrwehpqtgiippdqfiplaessglivimtrqlmkqtadilmpvkhllpdnfhiginvsa
gcflaagfekeclnlvnklgndkiklvlelternpipvtpearaifdslhqhnitfaldd
fgtgyatyrylqafpvdfikidksfvqmasvdeisghivdnivelarkpglsivaegvet
qeqadlmigkgvhflqgylysppvpgnkfisewvmkagg

    Sequence, based on observed residues (ATOM records):
    >4lykB (B:)
ivtpeaislalenhefkpwiqpvfcaqtgvltgcevlvrwehpqtgiippdqfiplaess
glivimtrqlmkqtadilmpvkhllpdnfhiginvsagcflaagfekeclnlvnklgndk
iklvlelternpipvtpearaifdslhqhnitfalddfgtgyatyrylqafpvdfikidk
sfvqmasvdeisghivdnivelarkpglsivaegvetqeqadlmigkgvhflqgylyspp
vpgnkfisewvmk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4lykC (C:)
mhhhhhhssglvprgshdnhyhhivtpeaislalenhefkpwiqpvfcaqtgvltgcevl
vrwehpqtgiippdqfiplaessglivimtrqlmkqtadilmpvkhllpdnfhiginvsa
gcflaagfekeclnlvnklgndkiklvlelternpipvtpearaifdslhqhnitfaldd
fgtgyatyrylqafpvdfikidksfvqmasvdeisghivdnivelarkpglsivaegvet
qeqadlmigkgvhflqgylysppvpgnkfisewvmkagg

    Sequence, based on observed residues (ATOM records):
    >4lykC (C:)
ivtpeaislalenhefkpwiqpvfcaqtgvltgcevlvrwehpqtgiippdqfiplaess
glivimtrqlmkqtadilmpvkhllpdnfhiginvsagcflaagfekeclnlvnklgndk
iklvlelternpipvtpearaifdslhqhnitfalddfgtgyatyrylqafpvdfikidk
sfvqmasvdeisghivdnivelarkpglsivaegvetqeqadlmigkgvhflqgylyspp
vpgnkfisewvm

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4lykD (D:)
mhhhhhhssglvprgshdnhyhhivtpeaislalenhefkpwiqpvfcaqtgvltgcevl
vrwehpqtgiippdqfiplaessglivimtrqlmkqtadilmpvkhllpdnfhiginvsa
gcflaagfekeclnlvnklgndkiklvlelternpipvtpearaifdslhqhnitfaldd
fgtgyatyrylqafpvdfikidksfvqmasvdeisghivdnivelarkpglsivaegvet
qeqadlmigkgvhflqgylysppvpgnkfisewvmkagg

    Sequence, based on observed residues (ATOM records):
    >4lykD (D:)
hivtpeaislalenhefkpwiqpvfcaqtgvltgcevlvrwehpqtgiippdqfiplaes
sglivimtrqlmkqtadilmpvkhllpdnfhiginvsagcflaagfekeclnlvnklgnd
kiklvlelternpipvtpearaifdslhqhnitfalddfgtgyatyrylqafpvdfikid
ksfvqmasvdeisghivdnivelarkpglsivaegvetqeqadlmigkgvhflqgylysp
pvpgnkfisewvm