PDB entry 4ly4

View 4ly4 on RCSB PDB site
Description: Crystal structure of peptidoglycan deacetylase (HP0310) with Zinc from Helicobacter pylori
Deposited on 2013-07-30, released 2013-08-28
The last revision was dated 2014-10-08, with a file datestamp of 2014-10-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.171
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: peptidoglycan deacetylase
    Species: Helicobacter pylori [TaxId:563041]
    Gene: hp0310, HPG27_289
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: peptidoglycan deacetylase
    Species: Helicobacter pylori [TaxId:563041]
    Gene: hp0310, HPG27_289
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: peptidoglycan deacetylase
    Species: Helicobacter pylori [TaxId:563041]
    Gene: hp0310, HPG27_289
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: peptidoglycan deacetylase
    Species: Helicobacter pylori [TaxId:563041]
    Gene: hp0310, HPG27_289
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4ly4A (A:)
mhhhhhhgkpipnpllgldstenlyfqgidpftmakeilvaygvdidavagwlgsygged
spddisrglfagevgiprllklfkkyhlpatwfvpghsietfpeqmkmivdaghevgahg
yshenpiamstkqeedvllksvelikdltgkaptgyvapwwefsnitnelllkhgfkydh
slmhndftpyyvrvgdswskidysleakdwmkplirgvetnlveipanwylddlppmmfi
kkspnsfgfvsprdigqmwidqfdwvyremdyavfsmtihpdvsarpqvllmhekiiehi
nkhegvrwvtfneiaddflkrnprkk

    Sequence, based on observed residues (ATOM records):
    >4ly4A (A:)
akeilvaygvdidavagwlgsyggedspddisrglfagevgiprllklfkkyhlpatwfv
pghsietfpeqmkmivdaghevgahgyshenpiamstkqeedvllksvelikdltgkapt
gyvapwwefsnitnelllkhgfkydhslmhndftpyyvrvgdswskidysleakdwmkpl
irgvetnlveipanwylddlppmmfikkspnsfgfvsprdigqmwidqfdwvyremdyav
fsmtihpdvsarpqvllmhekiiehinkhegvrwvtfneiaddflkrnpr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4ly4B (B:)
mhhhhhhgkpipnpllgldstenlyfqgidpftmakeilvaygvdidavagwlgsygged
spddisrglfagevgiprllklfkkyhlpatwfvpghsietfpeqmkmivdaghevgahg
yshenpiamstkqeedvllksvelikdltgkaptgyvapwwefsnitnelllkhgfkydh
slmhndftpyyvrvgdswskidysleakdwmkplirgvetnlveipanwylddlppmmfi
kkspnsfgfvsprdigqmwidqfdwvyremdyavfsmtihpdvsarpqvllmhekiiehi
nkhegvrwvtfneiaddflkrnprkk

    Sequence, based on observed residues (ATOM records):
    >4ly4B (B:)
akeilvaygvdidavagwlgsyggedspddisrglfagevgiprllklfkkyhlpatwfv
pghsietfpeqmkmivdaghevgahgyshenpiamstkqeedvllksvelikdltgkapt
gyvapwwefsnitnelllkhgfkydhslmhndftpyyvrvgdswskidysleakdwmkpl
irgvetnlveipanwylddlppmmfikkspnsfgfvsprdigqmwidqfdwvyremdyav
fsmtihpdvsarpqvllmhekiiehinkhegvrwvtfneiaddflkrnpr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4ly4C (C:)
mhhhhhhgkpipnpllgldstenlyfqgidpftmakeilvaygvdidavagwlgsygged
spddisrglfagevgiprllklfkkyhlpatwfvpghsietfpeqmkmivdaghevgahg
yshenpiamstkqeedvllksvelikdltgkaptgyvapwwefsnitnelllkhgfkydh
slmhndftpyyvrvgdswskidysleakdwmkplirgvetnlveipanwylddlppmmfi
kkspnsfgfvsprdigqmwidqfdwvyremdyavfsmtihpdvsarpqvllmhekiiehi
nkhegvrwvtfneiaddflkrnprkk

    Sequence, based on observed residues (ATOM records):
    >4ly4C (C:)
akeilvaygvdidavagwlgsyggedspddisrglfagevgiprllklfkkyhlpatwfv
pghsietfpeqmkmivdaghevgahgyshenpiamstkqeedvllksvelikdltgkapt
gyvapwwefsnitnelllkhgfkydhslmhndftpyyvrvgdswskidysleakdwmkpl
irgvetnlveipanwylddlppmmfikkspnsfgfvsprdigqmwidqfdwvyremdyav
fsmtihpdvsarpqvllmhekiiehinkhegvrwvtfneiaddflkrnpr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4ly4D (D:)
mhhhhhhgkpipnpllgldstenlyfqgidpftmakeilvaygvdidavagwlgsygged
spddisrglfagevgiprllklfkkyhlpatwfvpghsietfpeqmkmivdaghevgahg
yshenpiamstkqeedvllksvelikdltgkaptgyvapwwefsnitnelllkhgfkydh
slmhndftpyyvrvgdswskidysleakdwmkplirgvetnlveipanwylddlppmmfi
kkspnsfgfvsprdigqmwidqfdwvyremdyavfsmtihpdvsarpqvllmhekiiehi
nkhegvrwvtfneiaddflkrnprkk

    Sequence, based on observed residues (ATOM records):
    >4ly4D (D:)
akeilvaygvdidavagwlgsyggedspddisrglfagevgiprllklfkkyhlpatwfv
pghsietfpeqmkmivdaghevgahgyshenpiamstkqeedvllksvelikdltgkapt
gyvapwwefsnitnelllkhgfkydhslmhndftpyyvrvgdswskidysleakdwmkpl
irgvetnlveipanwylddlppmmfikkspnsfgfvsprdigqmwidqfdwvyremdyav
fsmtihpdvsarpqvllmhekiiehinkhegvrwvtfneiaddflkrnpr