PDB entry 4lxv

View 4lxv on RCSB PDB site
Description: Crystal Structure of the Hemagglutinin from a H1N1pdm A/WASHINGTON/5/2011 virus
Class: viral protein
Keywords: Hemagglutinin, pandemic, influenza, VIRAL PROTEIN
Deposited on 2013-07-30, released 2014-02-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot J7MFR5 (5-End)
      • expression tag (4)
    Domains in SCOPe 2.08: d4lxva1, d4lxva2
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lxvb_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot J7MFR5 (5-End)
      • expression tag (4)
    Domains in SCOPe 2.08: d4lxvc1, d4lxvc2
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lxvd_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot J7MFR5 (5-End)
      • expression tag (4)
    Domains in SCOPe 2.08: d4lxve1, d4lxve2
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lxvf_
  • Chain 'G':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot J7MFR5 (5-End)
      • expression tag (4)
    Domains in SCOPe 2.08: d4lxvg1, d4lxvg2
  • Chain 'H':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lxvh_
  • Chain 'I':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot J7MFR5 (5-End)
      • expression tag (4)
    Domains in SCOPe 2.08: d4lxvi1, d4lxvi2
  • Chain 'J':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lxvj_
  • Chain 'K':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot J7MFR5 (5-End)
      • expression tag (4)
    Domains in SCOPe 2.08: d4lxvk1, d4lxvk2
  • Chain 'L':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:114727]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4lxvl_
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4lxvA (A:)
adlgsdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkc
niagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfe
ifpktsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlv
lwgihhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlve
pgdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqni
hpitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvA (A:)
sdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnvp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4lxvB (B:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmn
tqftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlye
kvrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
rg

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvB (B:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmnt
qftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlyek
vrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnree

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4lxvC (C:)
adlgsdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkc
niagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfe
ifpktsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlv
lwgihhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlve
pgdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqni
hpitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvC (C:)
sdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnvp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4lxvD (D:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmn
tqftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlye
kvrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
rg

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvD (D:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmnt
qftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlyek
vrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnree

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4lxvE (E:)
adlgsdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkc
niagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfe
ifpktsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlv
lwgihhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlve
pgdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqni
hpitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvE (E:)
sdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnvp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4lxvF (F:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmn
tqftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlye
kvrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
rg

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvF (F:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmnt
qftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlyek
vrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnree

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4lxvG (G:)
adlgsdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkc
niagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfe
ifpktsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlv
lwgihhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlve
pgdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqni
hpitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvG (G:)
sdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnvp

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4lxvH (H:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmn
tqftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlye
kvrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
rg

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvH (H:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmnt
qftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlyek
vrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnree

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >4lxvI (I:)
adlgsdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkc
niagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfe
ifpktsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlv
lwgihhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlve
pgdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqni
hpitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvI (I:)
sdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnvp

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >4lxvJ (J:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmn
tqftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlye
kvrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
rg

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvJ (J:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmnt
qftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlyek
vrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnree

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >4lxvK (K:)
adlgsdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkc
niagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfe
ifpktsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlv
lwgihhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlve
pgdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqni
hpitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvK (K:)
sdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagakgfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpsttadqqslyqnadtyvfvgtsryskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnvp

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4lxvL (L:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmn
tqftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlye
kvrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnreeidsgrlvp
rg

    Sequence, based on observed residues (ATOM records): (download) 
    >4lxvL (L:)
lfgaiagfieggwtgmvdgwygyhhqneqgsgyaadlkstqnaidkitnkvnsviekmnt
qftavgkefnhlekrienlnkkvddgfldiwtynaellvllenertldyhdsnvknlyek
vrnqlknnakeigngcfefyhkcdntcmesvkngtydypkyseeaklnree