PDB entry 4lty

View 4lty on RCSB PDB site
Description: Crystal Structure of E.coli SbcD at 1.8 A Resolution
Deposited on 2013-07-24, released 2014-02-26
The last revision was dated 2014-02-26, with a file datestamp of 2014-02-21.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.158
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Exonuclease subunit SbcD
    Species: Escherichia coli [TaxId:595495]
    Gene: sbcD, EKO11_3451, KO11_21615
    Database cross-references and differences (RAF-indexed):
    • Uniprot E8Y9D8 (14-353)
      • expression tag (9-13)
  • Chain 'B':
    Compound: Exonuclease subunit SbcD
    Species: Escherichia coli [TaxId:595495]
    Gene: sbcD, EKO11_3451, KO11_21615
    Database cross-references and differences (RAF-indexed):
    • Uniprot E8Y9D8 (14-353)
      • expression tag (12-13)
  • Chain 'C':
    Compound: Exonuclease subunit SbcD
    Species: Escherichia coli [TaxId:595495]
    Gene: sbcD, EKO11_3451, KO11_21615
    Database cross-references and differences (RAF-indexed):
    • Uniprot E8Y9D8 (14-End)
      • expression tag (11-13)
  • Chain 'D':
    Compound: Exonuclease subunit SbcD
    Species: Escherichia coli [TaxId:595495]
    Gene: sbcD, EKO11_3451, KO11_21615
    Database cross-references and differences (RAF-indexed):
    • Uniprot E8Y9D8 (14-353)
      • expression tag (9-13)
  • Heterogens: GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4ltyA (A:)
mshhhhhhsmdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiiva
gdvfdtgsppsyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvva
saghapqilprrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhya
dacklrgdqplpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihra
qiiggmehvrycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdl
asitaqleqwrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

    Sequence, based on observed residues (ATOM records):
    >4ltyA (A:)
mdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiivagdvfdtgsp
psyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvvasaghapqil
prrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhyadacklrgdq
plpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihraqiiggmehv
rycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdlasitaqleq
wrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4ltyB (B:)
mshhhhhhsmdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiiva
gdvfdtgsppsyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvva
saghapqilprrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhya
dacklrgdqplpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihra
qiiggmehvrycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdl
asitaqleqwrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

    Sequence, based on observed residues (ATOM records):
    >4ltyB (B:)
efmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiivagdvfdtgsppsy
artlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvvasaghapqilprr
dgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhyadacklrgdqplp
iiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihraqiiggmehvryc
gspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdlasitaqleqwrd
vsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4ltyC (C:)
mshhhhhhsmdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiiva
gdvfdtgsppsyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvva
saghapqilprrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhya
dacklrgdqplpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihra
qiiggmehvrycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdl
asitaqleqwrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

    Sequence, based on observed residues (ATOM records):
    >4ltyC (C:)
iefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiivagdvfdtgspps
yartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvvasaghapqilpr
rdgtpgavlcpipflrprdiitsqekqqhllaaitdyyqqhyadacklrgdqplpiiatg
hlttvgasksdavrdiyigtldafpaqnfppadyialghihraqiiggmehvrycgspip
lsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdlasitaqleqqeppvwld
ieideylhdiqrkiqalteslpvevllv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4ltyD (D:)
mshhhhhhsmdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiiva
gdvfdtgsppsyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvva
saghapqilprrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhya
dacklrgdqplpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihra
qiiggmehvrycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdl
asitaqleqwrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr

    Sequence, based on observed residues (ATOM records):
    >4ltyD (D:)
mdiefmrilhtsdwhlgqnfysksreaehqafldwlletaqthqvdaiivagdvfdtgsp
psyartlynrfvvnlqqtgchlvvlagnhdsvatlnesrdimaflnttvvasaghapqil
prrdgtpgavlcpipflrprdiitsqaglngiekqqhllaaitdyyqqhyadacklrgdq
plpiiatghlttvgasksdavrdiyigtldafpaqnfppadyialghihraqiiggmehv
rycgspiplsfdecgkskyvhlvtfsngklesvenlnvpvtqpmavlkgdlasitaqleq
wrdvsqeppvwldieittdeylhdiqrkiqalteslpvevllvrr