PDB entry 4lqw
View 4lqw on RCSB PDB site
Description: Crystal structure of HIV-1 capsid N-terminal domain in complex with NUP358 cyclophilin
Class: isomerase
Keywords: cyclophilin, isomerase, capsid
Deposited on
2013-07-19, released
2013-08-14
The last revision prior to the SCOPe 2.08 freeze date was dated
2015-02-04, with a file datestamp of
2015-01-30.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.207
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: E3 SUMO-protein ligase RanBP2
Species: Homo sapiens [TaxId:9606]
Gene: RANBP2, NUP358
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4lqwa1, d4lqwa2 - Chain 'B':
Compound: E3 SUMO-protein ligase RanBP2
Species: Homo sapiens [TaxId:9606]
Gene: RANBP2, NUP358
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4lqwb1, d4lqwb2 - Chain 'C':
Compound: capsid protein p24
Species: Human immunodeficiency virus type 1 [TaxId:11698]
Gene: gag-pol
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4lqwc_ - Chain 'D':
Compound: capsid protein p24
Species: Human immunodeficiency virus type 1 [TaxId:11698]
Gene: gag-pol
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4lqwd_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4lqwA (A:)
mahhhhhhmelsketnpvvffdvcadgeplgritmelfsnivprtaenfralctgekgfg
fknsifhrvipdfvcqggditkhdgtggqsiygdkfedenfdvkhtgpgllsmanqgqnt
nnsqfvitlkkaehldfkhvvfgfvkdgmdtvkkiesfgspkgsvcrrititecgqi
Sequence, based on observed residues (ATOM records): (download)
>4lqwA (A:)
melsketnpvvffdvcadgeplgritmelfsnivprtaenfralctgekgfgfknsifhr
vipdfvcqggditkhdgtggqsiygdkfedenfdvkhtgpgllsmanqgqntnnsqfvit
lkkaehldfkhvvfgfvkdgmdtvkkiesfgspkgsvcrrititecgqi
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4lqwB (B:)
mahhhhhhmelsketnpvvffdvcadgeplgritmelfsnivprtaenfralctgekgfg
fknsifhrvipdfvcqggditkhdgtggqsiygdkfedenfdvkhtgpgllsmanqgqnt
nnsqfvitlkkaehldfkhvvfgfvkdgmdtvkkiesfgspkgsvcrrititecgqi
Sequence, based on observed residues (ATOM records): (download)
>4lqwB (B:)
melsketnpvvffdvcadgeplgritmelfsnivprtaenfralctgekgfgfknsifhr
vipdfvcqggditkhdgtggqsiygdkfedenfdvkhtgpgllsmanqgqntnnsqfvit
lkkaehldfkhvvfgfvkdgmdtvkkiesfgspkgsvcrrititecgqi
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>4lqwC (C:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmys
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4lqwD (D:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmys
Sequence, based on observed residues (ATOM records): (download)
>4lqwD (D:)
pivqqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvgghqa
amqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmthnppi
pvgeiykrwiilglnkivrmy