PDB entry 4ln6

View 4ln6 on RCSB PDB site
Description: The crystal structure of hemagglutinin from a h7n9 influenza virus (a/shanghai/2/2013)
Class: viral protein
Keywords: receptor specificity, viral protein
Deposited on 2013-07-11, released 2013-10-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.12 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6a_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6b_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6c_
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6d_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6e_
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6f_
  • Chain 'G':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6g_
  • Chain 'H':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6h_
  • Chain 'I':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6i_
  • Chain 'J':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6j_
  • Chain 'K':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6k_
  • Chain 'L':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1332244]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LN6
    Domains in SCOPe 2.08: d4ln6l_
  • Heterogens: CA, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ln6A (A:)
adpgdkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgl
lgtitgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgft
ysgirtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhs
vstaeqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtf
sfngafiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkc
pryvkqrslllatgmknvpeipkgr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6A (A:)
dkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgftysgi
rtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhsvsta
eqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtfsfng
afiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkcpryv
kqrslllatgmknvpe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ln6B (B:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnriqidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6B (B:)
aiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektnqqfe
lidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklyervkr
qlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnri

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ln6C (C:)
adpgdkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgl
lgtitgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgft
ysgirtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhs
vstaeqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtf
sfngafiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkc
pryvkqrslllatgmknvpeipkgr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6C (C:)
dkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgftysgi
rtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhsvsta
eqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtfsfng
afiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkcpryv
kqrslllatgmknvpe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ln6D (D:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnriqidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6D (D:)
aiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektnqqfe
lidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklyervkr
qlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnri

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4ln6E (E:)
adpgdkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgl
lgtitgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgft
ysgirtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhs
vstaeqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtf
sfngafiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkc
pryvkqrslllatgmknvpeipkgr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6E (E:)
dkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgftysgi
rtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhsvsta
eqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtfsfng
afiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkcpryv
kqrslllatgmknvpe

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4ln6F (F:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnriqidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6F (F:)
aiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektnqqfe
lidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklyervkr
qlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnri

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4ln6G (G:)
adpgdkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgl
lgtitgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgft
ysgirtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhs
vstaeqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtf
sfngafiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkc
pryvkqrslllatgmknvpeipkgr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6G (G:)
dkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgftysgi
rtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhsvsta
eqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtfsfng
afiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkcpryv
kqrslllatgmknvpe

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4ln6H (H:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnriqidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6H (H:)
fgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektnqq
felidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklyerv
krqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnri

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >4ln6I (I:)
adpgdkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgl
lgtitgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgft
ysgirtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhs
vstaeqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtf
sfngafiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkc
pryvkqrslllatgmknvpeipkgr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6I (I:)
dkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgftysgi
rtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhsvsta
eqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtfsfng
afiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkcpryv
kqrslllatgmknvpe

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >4ln6J (J:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnriqidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6J (J:)
fgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektnqq
felidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklyerv
krqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnri

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >4ln6K (K:)
adpgdkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgl
lgtitgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgft
ysgirtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhs
vstaeqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtf
sfngafiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkc
pryvkqrslllatgmknvpeipkgr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6K (K:)
dkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgftysgi
rtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhsvsta
eqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtfsfng
afiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkcpryv
kqrslllatgmknvpe

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4ln6L (L:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnriqidsgrlvp
r

    Sequence, based on observed residues (ATOM records): (download) 
    >4ln6L (L:)
fgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektnqq
felidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklyerv
krqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnri