PDB entry 4lmh

View 4lmh on RCSB PDB site
Description: crystal structure of the outer membrane decaheme cytochrome omca
Deposited on 2013-07-10, released 2014-04-16
The last revision was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Extracellular iron oxide respiratory system surface decaheme cytochrome c component OmcA
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: omcA, SO_1779
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Extracellular iron oxide respiratory system surface decaheme cytochrome c component OmcA
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: omcA, SO_1779
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EG33 (Start-729)
      • expression tag (730)
  • Chain 'C':
    Compound: Extracellular iron oxide respiratory system surface decaheme cytochrome c component OmcA
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: omcA, SO_1779
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Extracellular iron oxide respiratory system surface decaheme cytochrome c component OmcA
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: omcA, SO_1779
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EG33 (Start-729)
      • expression tag (730-731)
  • Heterogens: HEC, CA, DMS, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4lmhA (A:)
mkfklnlitlallantglavaaggsdgkdgedgkpgvvgvninststlkakftnatvdag
kvtvnftlenangvavlgltkdhdlrfgiaqltpvkekvgeteadrgyqwqayinakkep
gtvpsgvdnlnpstqfqanvesankcdtclvdhgdgsysytyqvnvanvtepvkvtysad
atqratmelelpqlaanahfdwqpstgktegiqtrnvvsiqacytchqpeslalhggrri
diencaschtatsgdpesgnsieftymihaihkggerhtfdatgaqvpapykiigyggkv
idygkvhypqkpaadcaachvegagapanadlfkadlsnqacigchtekpsahhsstdcm
achnatkpyggtgsaakrhgdvmkayndslgykakfsnigiknnaltfdvqildnkdqpi
gkefisdpsaytkssiyfswgidkdypaytagsrysdrgfalsnskvstyneatktftid
stnsnlklpadltgmnvelyagvatcfnkggygvedvvatpcstdtryayiqdqpfrfkw
ngtdtnsaaekrraiidtakcsgchnkeivhydngvncqachtpdkglktdntypgtkvp
tsfawkaheseghylkyagvqsgtvlktdcatchtadksnvvtgialgrsperawlygdi
knngaviwvssdagaclschqkylsdaakshietnggilngtsaadvqtrasescatcht
psqlmeahgnkgelklegkpipnpllgldstrtghhhhhh

    Sequence, based on observed residues (ATOM records):
    >4lmhA (A:)
vgvninststlkakftnatvdagkvtvnftlenangvavlgltkdhdlrfgiaqltpvke
kvgeteadrgyqwqayinakkepgtvpsgvdnlnpstqfqanvesankcdtclvdhgdgs
ysytyqvnvanvtepvkvtysadatqratmelelpqlaanahfdwqpstgktegiqtrnv
vsiqacytchqpeslalhggrridiencaschtatsgdpesgnsieftymihaihkgger
htfdatgaqvpapykiigyggkvidygkvhypqkpaadcaachvegagapanadlfkadl
snqacigchtekpsahhsstdcmachnatkpyggtgsaakrhgdvmkayndslgykakfs
nigiknnaltfdvqildnkdqpigkefisdpsaytkssiyfswgidkdypaytagsrysd
rgfalsnskvstyneatktftidstnsnlklpadltgmnvelyagvatcfnkggygvedv
vatpcstdtryayiqdqpfrfkwngtdtnsaaekrraiidtakcsgchnkeivhydngvn
cqachtpdkglktdntypgtkvptsfawkaheseghylkyagvqsgtvlktdcatchtad
ksnvvtgialgrsperawlygdiknngaviwvssdagaclschqkylsdaakshietngg
ilngtsaadvqtrasescatchtpsqlmeahgn

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4lmhB (B:)
mkfklnlitlallantglavaaggsdgkdgedgkpgvvgvninststlkakftnatvdag
kvtvnftlenangvavlgltkdhdlrfgiaqltpvkekvgeteadrgyqwqayinakkep
gtvpsgvdnlnpstqfqanvesankcdtclvdhgdgsysytyqvnvanvtepvkvtysad
atqratmelelpqlaanahfdwqpstgktegiqtrnvvsiqacytchqpeslalhggrri
diencaschtatsgdpesgnsieftymihaihkggerhtfdatgaqvpapykiigyggkv
idygkvhypqkpaadcaachvegagapanadlfkadlsnqacigchtekpsahhsstdcm
achnatkpyggtgsaakrhgdvmkayndslgykakfsnigiknnaltfdvqildnkdqpi
gkefisdpsaytkssiyfswgidkdypaytagsrysdrgfalsnskvstyneatktftid
stnsnlklpadltgmnvelyagvatcfnkggygvedvvatpcstdtryayiqdqpfrfkw
ngtdtnsaaekrraiidtakcsgchnkeivhydngvncqachtpdkglktdntypgtkvp
tsfawkaheseghylkyagvqsgtvlktdcatchtadksnvvtgialgrsperawlygdi
knngaviwvssdagaclschqkylsdaakshietnggilngtsaadvqtrasescatcht
psqlmeahgnkgelklegkpipnpllgldstrtghhhhhh

    Sequence, based on observed residues (ATOM records):
    >4lmhB (B:)
vgvninststlkakftnatvdagkvtvnftlenangvavlgltkdhdlrfgiaqltpvke
kvgeteadrgyqwqayinakkepgtvpsgvdnlnpstqfqanvesankcdtclvdhgdgs
ysytyqvnvanvtepvkvtysadatqratmelelpqlaanahfdwqpstgktegiqtrnv
vsiqacytchqpeslalhggrridiencaschtatsgdpesgnsieftymihaihkgger
htfdatgaqvpapykiigyggkvidygkvhypqkpaadcaachvegagapanadlfkadl
snqacigchtekpsahhsstdcmachnatkpyggtgsaakrhgdvmkayndslgykakfs
nigiknnaltfdvqildnkdqpigkefisdpsaytkssiyfswgidkdypaytagsrysd
rgfalsnskvstyneatktftidstnsnlklpadltgmnvelyagvatcfnkggygvedv
vatpcstdtryayiqdqpfrfkwngtdtnsaaekrraiidtakcsgchnkeivhydngvn
cqachtpdkglktdntypgtkvptsfawkaheseghylkyagvqsgtvlktdcatchtad
ksnvvtgialgrsperawlygdiknngaviwvssdagaclschqkylsdaakshietngg
ilngtsaadvqtrasescatchtpsqlmeahgnk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4lmhC (C:)
mkfklnlitlallantglavaaggsdgkdgedgkpgvvgvninststlkakftnatvdag
kvtvnftlenangvavlgltkdhdlrfgiaqltpvkekvgeteadrgyqwqayinakkep
gtvpsgvdnlnpstqfqanvesankcdtclvdhgdgsysytyqvnvanvtepvkvtysad
atqratmelelpqlaanahfdwqpstgktegiqtrnvvsiqacytchqpeslalhggrri
diencaschtatsgdpesgnsieftymihaihkggerhtfdatgaqvpapykiigyggkv
idygkvhypqkpaadcaachvegagapanadlfkadlsnqacigchtekpsahhsstdcm
achnatkpyggtgsaakrhgdvmkayndslgykakfsnigiknnaltfdvqildnkdqpi
gkefisdpsaytkssiyfswgidkdypaytagsrysdrgfalsnskvstyneatktftid
stnsnlklpadltgmnvelyagvatcfnkggygvedvvatpcstdtryayiqdqpfrfkw
ngtdtnsaaekrraiidtakcsgchnkeivhydngvncqachtpdkglktdntypgtkvp
tsfawkaheseghylkyagvqsgtvlktdcatchtadksnvvtgialgrsperawlygdi
knngaviwvssdagaclschqkylsdaakshietnggilngtsaadvqtrasescatcht
psqlmeahgnkgelklegkpipnpllgldstrtghhhhhh

    Sequence, based on observed residues (ATOM records):
    >4lmhC (C:)
gvninststlkakftnatvdagkvtvnftlenangvavlgltkdhdlrfgiaqltpvkek
vgeteadrgyqwqayinakkepgtvpsgvdnlnpstqfqanvesankcdtclvdhgdgsy
sytyqvnvanvtepvkvtysadatqratmelelpqlaanahfdwqpstgktegiqtrnvv
siqacytchqpeslalhggrridiencaschtatsgdpesgnsieftymihaihkggerh
tfdatgaqvpapykiigyggkvidygkvhypqkpaadcaachvegagapanadlfkadls
nqacigchtekpsahhsstdcmachnatkpyggtgsaakrhgdvmkayndslgykakfsn
igiknnaltfdvqildnkdqpigkefisdpsaytkssiyfswgidkdypaytagsrysdr
gfalsnskvstyneatktftidstnsnlklpadltgmnvelyagvatcfnkggygvedvv
atpcstdtryayiqdqpfrfkwngtdtnsaaekrraiidtakcsgchnkeivhydngvnc
qachtpdkglktdntypgtkvptsfawkaheseghylkyagvqsgtvlktdcatchtadk
snvvtgialgrsperawlygdiknngaviwvssdagaclschqkylsdaakshietnggi
lngtsaadvqtrasescatchtpsqlmeahgn

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4lmhD (D:)
mkfklnlitlallantglavaaggsdgkdgedgkpgvvgvninststlkakftnatvdag
kvtvnftlenangvavlgltkdhdlrfgiaqltpvkekvgeteadrgyqwqayinakkep
gtvpsgvdnlnpstqfqanvesankcdtclvdhgdgsysytyqvnvanvtepvkvtysad
atqratmelelpqlaanahfdwqpstgktegiqtrnvvsiqacytchqpeslalhggrri
diencaschtatsgdpesgnsieftymihaihkggerhtfdatgaqvpapykiigyggkv
idygkvhypqkpaadcaachvegagapanadlfkadlsnqacigchtekpsahhsstdcm
achnatkpyggtgsaakrhgdvmkayndslgykakfsnigiknnaltfdvqildnkdqpi
gkefisdpsaytkssiyfswgidkdypaytagsrysdrgfalsnskvstyneatktftid
stnsnlklpadltgmnvelyagvatcfnkggygvedvvatpcstdtryayiqdqpfrfkw
ngtdtnsaaekrraiidtakcsgchnkeivhydngvncqachtpdkglktdntypgtkvp
tsfawkaheseghylkyagvqsgtvlktdcatchtadksnvvtgialgrsperawlygdi
knngaviwvssdagaclschqkylsdaakshietnggilngtsaadvqtrasescatcht
psqlmeahgnkgelklegkpipnpllgldstrtghhhhhh

    Sequence, based on observed residues (ATOM records):
    >4lmhD (D:)
vgvninststlkakftnatvdagkvtvnftlenangvavlgltkdhdlrfgiaqltpvke
kvgeteadrgyqwqayinakkepgtvpsgvdnlnpstqfqanvesankcdtclvdhgdgs
ysytyqvnvanvtepvkvtysadatqratmelelpqlaanahfdwqpstgktegiqtrnv
vsiqacytchqpeslalhggrridiencaschtatsgdpesgnsieftymihaihkgger
htfdatgaqvpapykiigyggkvidygkvhypqkpaadcaachvegagapanadlfkadl
snqacigchtekpsahhsstdcmachnatkpyggtgsaakrhgdvmkayndslgykakfs
nigiknnaltfdvqildnkdqpigkefisdpsaytkssiyfswgidkdypaytagsrysd
rgfalsnskvstyneatktftidstnsnlklpadltgmnvelyagvatcfnkggygvedv
vatpcstdtryayiqdqpfrfkwngtdtnsaaekrraiidtakcsgchnkeivhydngvn
cqachtpdkglktdntypgtkvptsfawkaheseghylkyagvqsgtvlktdcatchtad
ksnvvtgialgrsperawlygdiknngaviwvssdagaclschqkylsdaakshietngg
ilngtsaadvqtrasescatchtpsqlmeahgnkg