PDB entry 4lmd

View 4lmd on RCSB PDB site
Description: Crystal structure of the JCV large t-antigen origin binding domain
Class: hydrolase
Keywords: Origin Binding Domain, DNA Replication, Hydrolase
Deposited on 2013-07-10, released 2014-04-02
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-04-02, with a file datestamp of 2014-03-28.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.169
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: large t antigen
    Species: JC polyomavirus [TaxId:10632]
    Gene: large T antigen
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4lmda_
  • Chain 'B':
    Compound: large t antigen
    Species: JC polyomavirus [TaxId:10632]
    Gene: large T antigen
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4lmdb_
  • Heterogens: GOL, FLC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4lmdA (A:)
gskvedpkdfpvdlhaflsqavfsnrtvasfavyttkekaqilykklmekysvtfisrhg
fgghnilffltphrhrvsainnycqklctfsflickgvnkeylfysalcrqpyavveesi
qgglkehdfnpe

    Sequence, based on observed residues (ATOM records): (download) 
    >4lmdA (A:)
edpkdfpvdlhaflsqavfsnrtvasfavyttkekaqilykklmekysvtfisrhgfggh
nilffltphrhrvsainnycqklctfsflickgvnkeylfysalcrqpyavveesiqggl
kehdfnpe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4lmdB (B:)
gskvedpkdfpvdlhaflsqavfsnrtvasfavyttkekaqilykklmekysvtfisrhg
fgghnilffltphrhrvsainnycqklctfsflickgvnkeylfysalcrqpyavveesi
qgglkehdfnpe

    Sequence, based on observed residues (ATOM records): (download) 
    >4lmdB (B:)
kvedpkdfpvdlhaflsqavfsnrtvasfavyttkekaqilykklmekysvtfisrhgfg
ghnilffltphrhrvsainnycqklctfsflickgvnkeylfysalcrqpyavveesiqg
glkehdfnpe