PDB entry 4llf

View 4llf on RCSB PDB site
Description: Crystal structure of Cucumber Necrosis Virus
Deposited on 2013-07-09, released 2013-10-30
The last revision was dated 2013-10-30, with a file datestamp of 2013-10-25.
Experiment type: XRAY
Resolution: 2.89 Å
R-factor: 0.214
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: capsid protein
    Species: Cucumber necrosis virus [TaxId:12143]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CA, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4llfA (A:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfA (A:)
gsvrithreyvsvlsgtngeflrnngtgpnndfsinplnpflfpwlvniaanfdqykfns
lrfeyvplvntttngrvalyfdkdsedpgpddraalanyahlseispwaitkltvptdnv
krfisdtssgdpklinlgqfgwvaysgptaelgdifveytvdlfeaqptsplleslfres
assvqtrmglpyfslevasatdlvwqarvpgtyvvtiifnstvggltpsisgggtinssf
svstagssayvanitirvnanlslsgltgatnaqlfavraitenavqvv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4llfB (B:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfB (B:)
akgsvrithreyvsvlsgtngeflrnngtgpnndfsinplnpflfpwlvniaanfdqykf
nslrfeyvplvntttngrvalyfdkdsedpgpddraalanyahlseispwaitkltvptd
nvkrfisdtssgdpklinlgqfgwvaysgptaelgdifveytvdlfeaqptsplleslfr
esassvqtrmglpyfslevasatdlvwqarvpgtyvvtiifnstvggltpsisgggtins
sfsvstagssayvanitirvnanlslsgltgatnaqlfavraitenavqvv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4llfD (D:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfD (D:)
iahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtg
pnndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedp
gpddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgp
taelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqar
vpgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsglt
gatnaqlfavraitenavqvv

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4llfE (E:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfE (E:)
gsvrithreyvsvlsgtngeflrnngtgpnndfsinplnpflfpwlvniaanfdqykfns
lrfeyvplvntttngrvalyfdkdsedpgpddraalanyahlseispwaitkltvptdnv
krfisdtssgdpklinlgqfgwvaysgptaelgdifveytvdlfeaqptsplleslfres
assvqtrmglpyfslevasatdlvwqarvpgtyvvtiifnstvggltpsisgggtinssf
svstagssayvanitirvnanlslsgltgatnaqlfavraitenavqvv

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4llfF (F:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfF (F:)
akgsvrithreyvsvlsgtngeflrnngtgpnndfsinplnpflfpwlvniaanfdqykf
nslrfeyvplvntttngrvalyfdkdsedpgpddraalanyahlseispwaitkltvptd
nvkrfisdtssgdpklinlgqfgwvaysgptaelgdifveytvdlfeaqptsplleslfr
esassvqtrmglpyfslevasatdlvwqarvpgtyvvtiifnstvggltpsisgggtins
sfsvstagssayvanitirvnanlslsgltgatnaqlfavraitenavqvv

  • Chain 'G':
    Sequence, based on SEQRES records:
    >4llfG (G:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfG (G:)
iahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtg
pnndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedp
gpddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgp
taelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqar
vpgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsglt
gatnaqlfavraitenavqvv

  • Chain 'H':
    Sequence, based on SEQRES records:
    >4llfH (H:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfH (H:)
gsvrithreyvsvlsgtngeflrnngtgpnndfsinplnpflfpwlvniaanfdqykfns
lrfeyvplvntttngrvalyfdkdsedpgpddraalanyahlseispwaitkltvptdnv
krfisdtssgdpklinlgqfgwvaysgptaelgdifveytvdlfeaqptsplleslfres
assvqtrmglpyfslevasatdlvwqarvpgtyvvtiifnstvggltpsisgggtinssf
svstagssayvanitirvnanlslsgltgatnaqlfavraitenavqvv

  • Chain 'I':
    Sequence, based on SEQRES records:
    >4llfI (I:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfI (I:)
akgsvrithreyvsvlsgtngeflrnngtgpnndfsinplnpflfpwlvniaanfdqykf
nslrfeyvplvntttngrvalyfdkdsedpgpddraalanyahlseispwaitkltvptd
nvkrfisdtssgdpklinlgqfgwvaysgptaelgdifveytvdlfeaqptsplleslfr
esassvqtrmglpyfslevasatdlvwqarvpgtyvvtiifnstvggltpsisgggtins
sfsvstagssayvanitirvnanlslsgltgatnaqlfavraitenavqvv

  • Chain 'J':
    Sequence, based on SEQRES records:
    >4llfJ (J:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfJ (J:)
iahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtg
pnndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedp
gpddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgp
taelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqar
vpgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsglt
gatnaqlfavraitenavqvv

  • Chain 'K':
    Sequence, based on SEQRES records:
    >4llfK (K:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfK (K:)
gsvrithreyvsvlsgtngeflrnngtgpnndfsinplnpflfpwlvniaanfdqykfns
lrfeyvplvntttngrvalyfdkdsedpgpddraalanyahlseispwaitkltvptdnv
krfisdtssgdpklinlgqfgwvaysgptaelgdifveytvdlfeaqptsplleslfres
assvqtrmglpyfslevasatdlvwqarvpgtyvvtiifnstvggltpsisgggtinssf
svstagssayvanitirvnanlslsgltgatnaqlfavraitenavqvv

  • Chain 'L':
    Sequence, based on SEQRES records:
    >4llfL (L:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfL (L:)
akgsvrithreyvsvlsgtngeflrnngtgpnndfsinplnpflfpwlvniaanfdqykf
nslrfeyvplvntttngrvalyfdkdsedpgpddraalanyahlseispwaitkltvptd
nvkrfisdtssgdpklinlgqfgwvaysgptaelgdifveytvdlfeaqptsplleslfr
esassvqtrmglpyfslevasatdlvwqarvpgtyvvtiifnstvggltpsisgggtins
sfsvstagssayvanitirvnanlslsgltgatnaqlfavraitenavqvv

  • Chain 'M':
    Sequence, based on SEQRES records:
    >4llfM (M:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfM (M:)
iahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtg
pnndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedp
gpddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgp
taelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqar
vpgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsglt
gatnaqlfavraitenavqvv

  • Chain 'N':
    Sequence, based on SEQRES records:
    >4llfN (N:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfN (N:)
gsvrithreyvsvlsgtngeflrnngtgpnndfsinplnpflfpwlvniaanfdqykfns
lrfeyvplvntttngrvalyfdkdsedpgpddraalanyahlseispwaitkltvptdnv
krfisdtssgdpklinlgqfgwvaysgptaelgdifveytvdlfeaqptsplleslfres
assvqtrmglpyfslevasatdlvwqarvpgtyvvtiifnstvggltpsisgggtinssf
svstagssayvanitirvnanlslsgltgatnaqlfavraitenavqvv

  • Chain 'O':
    Sequence, based on SEQRES records:
    >4llfO (O:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfO (O:)
akgsvrithreyvsvlsgtngeflrnngtgpnndfsinplnpflfpwlvniaanfdqykf
nslrfeyvplvntttngrvalyfdkdsedpgpddraalanyahlseispwaitkltvptd
nvkrfisdtssgdpklinlgqfgwvaysgptaelgdifveytvdlfeaqptsplleslfr
esassvqtrmglpyfslevasatdlvwqarvpgtyvvtiifnstvggltpsisgggtins
sfsvstagssayvanitirvnanlslsgltgatnaqlfavraitenavqvv

  • Chain 'P':
    Sequence, based on SEQRES records:
    >4llfP (P:)
malvsrnnnmrtlaklaaplatagtrtivdnkeaiwngvkwiwgklpkgkkgkngngali
ahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtgp
nndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedpg
pddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgpt
aelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqarv
pgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsgltg
atnaqlfavraitenavqvv

    Sequence, based on observed residues (ATOM records):
    >4llfP (P:)
iahpqafpgaiaapisyayavkgrkprfqtakgsvrithreyvsvlsgtngeflrnngtg
pnndfsinplnpflfpwlvniaanfdqykfnslrfeyvplvntttngrvalyfdkdsedp
gpddraalanyahlseispwaitkltvptdnvkrfisdtssgdpklinlgqfgwvaysgp
taelgdifveytvdlfeaqptsplleslfresassvqtrmglpyfslevasatdlvwqar
vpgtyvvtiifnstvggltpsisgggtinssfsvstagssayvanitirvnanlslsglt
gatnaqlfavraitenavqvv