PDB entry 4ljk

View 4ljk on RCSB PDB site
Description: Structural insights into the unique single-stranded DNA binding mode of DNA processing protein A from Helicobacter pylori
Deposited on 2013-07-05, released 2014-01-01
The last revision was dated 2014-11-12, with a file datestamp of 2014-11-07.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.19
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA processing chain A (DprA)
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HP0333, HP_0333
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA processing chain A (DprA)
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HP0333, HP_0333
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA processing chain A (DprA)
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HP0333, HP_0333
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA processing chain A (DprA)
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HP0333, HP_0333
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA processing chain A (DprA)
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HP0333, HP_0333
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: DNA processing chain A (DprA)
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HP0333, HP_0333
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: DNA processing chain A (DprA)
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HP0333, HP_0333
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: DNA processing chain A (DprA)
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HP0333, HP_0333
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4ljkA (A:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhlkempelehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ljkA (A:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4ljkB (B:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhlkempelehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ljkB (B:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhlk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4ljkC (C:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhlkempelehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ljkC (C:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4ljkD (D:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhlkempelehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ljkD (D:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyh

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4ljkE (E:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhlkempelehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ljkE (E:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhl

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4ljkF (F:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhlkempelehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ljkF (F:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhlkemp

  • Chain 'G':
    Sequence, based on SEQRES records:
    >4ljkG (G:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhlkempelehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ljkG (G:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdy

  • Chain 'H':
    Sequence, based on SEQRES records:
    >4ljkH (H:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyhlkempelehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ljkH (H:)
mkshfqystlenipkafdilkdppkklycvgdtklldtplkvaiigtrrptpyskqhtit
larelakngavivsggalgvdiiaqenalpktimlspcsldfiyptnnhkviqeiaqngl
ilseyekdfmpikgsflarnrlvialsdvviipqadlksgsmssarlaqkyqkplfvlpq
rlnesdgtnellekgqaqgifniqnfintllkdyh