PDB entry 4ljd

View 4ljd on RCSB PDB site
Description: Structure of a photobleached state of IrisFP under low intensity laser-light
Class: fluorescent protein
Keywords: Fluorescent protein, Photobleaching, Beta-Barrel, Oxidation
Deposited on 2013-07-04, released 2013-10-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-11-06, with a file datestamp of 2013-11-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.202
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: green to red photoconvertible gpf-like protein eosfp
    Species: Lobophyllia hemprichii [TaxId:46758]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5S6Z9 (6-228)
      • chromophore (69)
      • engineered mutation (178)
      • engineered mutation (196)
    Domains in SCOPe 2.08: d4ljda_
  • Chain 'B':
    Compound: green to red photoconvertible gpf-like protein eosfp
    Species: Lobophyllia hemprichii [TaxId:46758]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5S6Z9 (Start-228)
      • chromophore (69)
      • engineered mutation (178)
      • engineered mutation (196)
    Domains in SCOPe 2.08: d4ljdb_
  • Chain 'C':
    Compound: green to red photoconvertible gpf-like protein eosfp
    Species: Lobophyllia hemprichii [TaxId:46758]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5S6Z9 (7-228)
      • expression tag (4-6)
      • chromophore (69)
      • engineered mutation (178)
      • engineered mutation (196)
    Domains in SCOPe 2.08: d4ljdc1, d4ljdc2
  • Chain 'D':
    Compound: green to red photoconvertible gpf-like protein eosfp
    Species: Lobophyllia hemprichii [TaxId:46758]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5S6Z9 (6-228)
      • chromophore (69)
      • engineered mutation (178)
      • engineered mutation (196)
    Domains in SCOPe 2.08: d4ljdd_
  • Heterogens: SO4, SO3, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ljdA (A:)
hhhhhhmsaikpdmkinlrmegnvnghhfvidgdgtgkpfegkqsmdlevkeggplpfaf
dilttafhygnrvfaeypdhiqdyfkqsfpkgyswersltfedggiciarnditmegdtf
ynkvrfhgvnfpangpvmqkktlkwepstekmyvrdgvltgditmalllegnahyrcdsr
ttykakekgvklpgyhlvdhcieilshdkdynkvklyehavahsglpdn

    Sequence, based on observed residues (ATOM records): (download) 
    >4ljdA (A:)
msaikpdmkinlrmegnvnghhfvidgdgtgkpfegkqsmdlevkeggplpfafdiltta
fhygnrvfaeypdhiqdyfkqsfpkgyswersltfedggiciarnditmegdtfynkvrf
hgvnfpangpvmqkktlkwepstekmyvrdgvltgditmalllegnahyrcdsrttykak
ekgvklpgyhlvdhcieilshdkdynkvklyehavahsglpdn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ljdB (B:)
hhhhhhmsaikpdmkinlrmegnvnghhfvidgdgtgkpfegkqsmdlevkeggplpfaf
dilttafhygnrvfaeypdhiqdyfkqsfpkgyswersltfedggiciarnditmegdtf
ynkvrfhgvnfpangpvmqkktlkwepstekmyvrdgvltgditmalllegnahyrcdsr
ttykakekgvklpgyhlvdhcieilshdkdynkvklyehavahsglpdn

    Sequence, based on observed residues (ATOM records): (download) 
    >4ljdB (B:)
saikpdmkinlrmegnvnghhfvidgdgtgkpfegkqsmdlevkeggplpfafdilttaf
hygnrvfaeypdhiqdyfkqsfpkgyswersltfedggiciarnditmegdtfynkvrfh
gvnfpangpvmqkktlkwepstekmyvrdgvltgditmalllegnahyrcdsrttykake
kgvklpgyhlvdhcieilshdkdynkvklyehavahsglpdn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ljdC (C:)
hhhhhhmsaikpdmkinlrmegnvnghhfvidgdgtgkpfegkqsmdlevkeggplpfaf
dilttafhygnrvfaeypdhiqdyfkqsfpkgyswersltfedggiciarnditmegdtf
ynkvrfhgvnfpangpvmqkktlkwepstekmyvrdgvltgditmalllegnahyrcdsr
ttykakekgvklpgyhlvdhcieilshdkdynkvklyehavahsglpdn

    Sequence, based on observed residues (ATOM records): (download) 
    >4ljdC (C:)
hhmsaikpdmkinlrmegnvnghhfvidgdgtgkpfegkqsmdlevkeggplpfafdilt
tafhygnrvfaeypdhiqdyfkqsfpkgyswersltfedggiciarnditmegdtfynkv
rfhgvnfpangpvmqkktlkwepstekmyvrdgvltgditmalllegnahyrcdsrttyk
akekgvklpgyhlvdhcieilshdkdynkvklyehavahsglpdn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ljdD (D:)
hhhhhhmsaikpdmkinlrmegnvnghhfvidgdgtgkpfegkqsmdlevkeggplpfaf
dilttafhygnrvfaeypdhiqdyfkqsfpkgyswersltfedggiciarnditmegdtf
ynkvrfhgvnfpangpvmqkktlkwepstekmyvrdgvltgditmalllegnahyrcdsr
ttykakekgvklpgyhlvdhcieilshdkdynkvklyehavahsglpdn

    Sequence, based on observed residues (ATOM records): (download) 
    >4ljdD (D:)
msaikpdmkinlrmegnvnghhfvidgdgtgkpfegkqsmdlevkeggplpfafdiltta
fhygnrvfaeypdhiqdyfkqsfpkgyswersltfedggiciarnditmegdtfynkvrf
hgvnfpangpvmqkktlkwepstekmyvrdgvltgditmalllegnahyrcdsrttykak
ekgvklpgyhlvdhcieilshdkdynkvklyehavahsglpdn