PDB entry 4lj3

View 4lj3 on RCSB PDB site
Description: Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in complex with substrate c-di-GMP and Ca++
Deposited on 2013-07-04, released 2014-01-29
The last revision was dated 2014-05-14, with a file datestamp of 2014-05-09.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.223
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cyclic di-GMP phosphodiesterase YahA
    Species: Escherichia coli [TaxId:83333]
    Gene: yahA, b0315, JW0307
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Cyclic di-GMP phosphodiesterase YahA
    Species: Escherichia coli [TaxId:83333]
    Gene: yahA, b0315, JW0307
    Database cross-references and differences (RAF-indexed):
  • Heterogens: C2E, CA, IMD, HB0, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4lj3A (A:)
mhhhhhhssglvprgshdnhyhhivtpeaislalenhefkpwiqpvfcaqtgvltgcevl
vrwehpqtgiippdqfiplaessglivimtrqlmkqtadilmpvkhllpdnfhiginvsa
gcflaagfekeclnlvnklgndkiklvlelternpipvtpearaifdslhqhnitfaldd
fgtgyatyrylqafpvdfikidksfvqmasvdeisghivdnivelarkpglsivaegvet
qeqadlmigkgvhflqgylysppvpgnkfisewvmkagg

    Sequence, based on observed residues (ATOM records):
    >4lj3A (A:)
yhhivtpeaislalenhefkpwiqpvfcaqtgvltgcevlvrwehpqtgiippdqfipla
essglivimtrqlmkqtadilmpvkhllpdnfhiginvsagcflaagfekeclnlvnklg
ndkiklvlelternpipvtpearaifdslhqhnitfalddfgtgyatyrylqafpvdfik
idksfvqmasvdeisghivdnivelarkpglsivaegvetqeqadlmigkgvhflqgyly
sppvpgnkfisewvmk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4lj3B (B:)
mhhhhhhssglvprgshdnhyhhivtpeaislalenhefkpwiqpvfcaqtgvltgcevl
vrwehpqtgiippdqfiplaessglivimtrqlmkqtadilmpvkhllpdnfhiginvsa
gcflaagfekeclnlvnklgndkiklvlelternpipvtpearaifdslhqhnitfaldd
fgtgyatyrylqafpvdfikidksfvqmasvdeisghivdnivelarkpglsivaegvet
qeqadlmigkgvhflqgylysppvpgnkfisewvmkagg

    Sequence, based on observed residues (ATOM records):
    >4lj3B (B:)
yhhivtpeaislalenhefkpwiqpvfcaqtgvltgcevlvrwehpqtgiippdqfipla
essglivimtrqlmkqtadilmpvkhllpdnfhiginvsagcflaagfekeclnlvnklg
ndkiklvlelternpipvtpearaifdslhqhnitfalddfgtgyatyrylqafpvdfik
idksfvqmasvdeisghivdnivelarkpglsivaegvetqeqadlmigkgvhflqgyly
sppvpgnkfisewvmk