PDB entry 4lit

View 4lit on RCSB PDB site
Description: Structure of YcfD a Ribosomal oxygenase from Escherichia coli in complex with Cobalt and 2-oxoglutarate.
Deposited on 2013-07-03, released 2014-05-14
The last revision was dated 2014-07-09, with a file datestamp of 2014-07-03.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.186
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 50S ribosomal protein L16 arginine hydroxylase
    Species: Escherichia coli [TaxId:83333]
    Gene: b1128, JW1114, ycfD
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CO, AKG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4litA (A:)
mgsshhhhhhssglvprgshmasmtggeemgrgsmeyqltlnwpdflerhwqkrpvvlkr
gfnnfidpispdelaglamesevdsrlvshqdgkwqvshgpfesydhlgetnwsllvqav
nhwheptaalmrpfrelpdwriddlmisfsvpgggvgphldqydvfiiqgtgrrrwrvge
klqmkqhcphpdllqvdpfeaiideelepgdilyippgfphegyalenamnysvgfrapn
trelisgfadyvlqrelggnyysdpdvpprahpadvlpqemdklremmlelinqpehfkq
wfgefisqsrheldiappeppyqpdeiydalkqgevlvrlgglrvlrigddvyangekid
sphrpaldalasnialtaenfgdaledpsflamlaalvnsgywffeg

    Sequence, based on observed residues (ATOM records):
    >4litA (A:)
eyqltlnwpdflerhwqkrpvvlkrgfnnfidpispdelaglamesevdsrlvshqdgkw
qvshgpfesydhlgetnwsllvqavnhwheptaalmrpfrelpdwriddlmisfsvpggg
vgphldqydvfiiqgtgrrrwrvgekllqvdpfeaiideelepgdilyippgfphegyal
enamnysvgfrapntrelisgfadyvlqrelggnyysdpdvpprahpadvlpqemdklre
mmlelinqpehfkqwfgefisqsrheldiappeppyqpdeiydalkqgevlvrlgglrvl
rigddvyangekidsphrpaldalasnialtaenfgdaledpsflamlaalvnsgywffe
g