PDB entry 4li0

View 4li0 on RCSB PDB site
Description: Crystal structure of GDP-bound Rab8:GRAB
Deposited on 2013-07-01, released 2013-10-09
The last revision was dated 2013-12-18, with a file datestamp of 2013-12-13.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.246
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ras-related protein Rab-8A
    Species: Homo sapiens [TaxId:9606]
    Gene: Rab8a, Mel, Rab8
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Ras-related protein Rab-8A
    Species: Homo sapiens [TaxId:9606]
    Gene: Rab8a, Mel, Rab8
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Guanine nucleotide exchange factor for Rab-3A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB3IL1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Guanine nucleotide exchange factor for Rab-3A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB3IL1
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Guanine nucleotide exchange factor for Rab-3A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB3IL1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Guanine nucleotide exchange factor for Rab-3A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB3IL1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GDP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4li0A (A:)
ghmaktydylfkllligdsgvgktcvlfrfsedafnstfistigidfkirtieldgkrik
lqiwdtagqerfrtittayyrgamgimlvyditneksfdnirnwirnieehasadvekmi
lgnkcdvndkrqvskergeklaldygikfmetsakaninvenafftlardikakmdkkle
gnspqg

    Sequence, based on observed residues (ATOM records):
    >4li0A (A:)
dylfkllligdsgvgktcvlfrfsedafnstfistigidfkirtieldgkriklqiwdta
gqerfrtittayyrgamgimlvyditneksfdnirnwirnieehasadvekmilgnkcdv
ndkrqvskergeklaldygikfmetsakaninvenafftlardikakmdkk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4li0B (B:)
ghmaktydylfkllligdsgvgktcvlfrfsedafnstfistigidfkirtieldgkrik
lqiwdtagqerfrtittayyrgamgimlvyditneksfdnirnwirnieehasadvekmi
lgnkcdvndkrqvskergeklaldygikfmetsakaninvenafftlardikakmdkkle
gnspqg

    Sequence, based on observed residues (ATOM records):
    >4li0B (B:)
ydylfkllligdsgvgktcvlfrfsedafnstfistigidfkirtieldgkriklqiwdt
agqerfrtittayyrgamgimlvyditneksfdnirnwirnieehasadvekmilgnkcd
vndkrqvskergeklaldygikfmetsakaninvenafftlardikakmdk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4li0C (C:)
gpekgseflkeelhraqkelklkdeecerlskvreqleqeleeltaslfeeahkmvrean
mkqaasekqlkeargkidmlqaev

    Sequence, based on observed residues (ATOM records):
    >4li0C (C:)
lkeelhraqkelklkdeecerlskvreqleqeleeltaslfeeahkmvreanmkqaasek
qlkeargki

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4li0D (D:)
gpekgseflkeelhraqkelklkdeecerlskvreqleqeleeltaslfeeahkmvrean
mkqaasekqlkeargkidmlqaev

    Sequence, based on observed residues (ATOM records):
    >4li0D (D:)
lkeelhraqkelklkdeecerlskvreqleqeleeltaslfeeahkmvreanmkqaasek
qlkeargki

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4li0E (E:)
gpekgseflkeelhraqkelklkdeecerlskvreqleqeleeltaslfeeahkmvrean
mkqaasekqlkeargkidmlqaev

    Sequence, based on observed residues (ATOM records):
    >4li0E (E:)
lkeelhraqkelklkdeecerlskvreqleqeleeltaslfeeahkmvreanmkqaasek
qlke

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4li0F (F:)
gpekgseflkeelhraqkelklkdeecerlskvreqleqeleeltaslfeeahkmvrean
mkqaasekqlkeargkidmlqaev

    Sequence, based on observed residues (ATOM records):
    >4li0F (F:)
keelhraqkelklkdeecerlskvreqleqeleeltaslfeeahkmvreanmkqaasekq
lkeargkid