PDB entry 4lhd

View 4lhd on RCSB PDB site
Description: Crystal structure of Synechocystis sp. PCC 6803 glycine decarboxylase (P-protein), holo form with pyridoxal-5'-phosphate and glycine, closed flexible loop
Deposited on 2013-07-01, released 2013-10-16
The last revision was dated 2013-12-25, with a file datestamp of 2013-12-20.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.164
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycine dehydrogenase [decarboxylating]
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: gcvP, slr0293
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Glycine dehydrogenase [decarboxylating]
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: gcvP, slr0293
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GLY, BCT, PO4, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4lhdA (A:)
mpnlepavvvptseaiavdltkleeklapadsfldrhlgpgeteqrqmlqtlgfdtlgdl
idqavppairfprslqlpasqseygaiaqlksiasknqvfrsyigmgyydtitppviqrn
ilenpgwytaytpyqaeiaqgrleallnfqtmvmdltgleianaslldegtaaaeamals
ygvskskanaffvaqdchpqtieviktranplgievivgdhhtfsfstsifgallqypat
dgavydyrsfidkahqhqalvtlaadplsltlltppgelgadiavgstqrfgiplgyggp
haayfatkaeyqrkmpgrivgvskdahgnpalrlalqtreqhirrdkatsnictaqvlla
vmasmygvyhgstglknialrihqltvllaiglkrlnyslnndyffdtlrvgvgeqsapa
ilkaaegrginlrplvpgevgisldetvtvqdlldlwqvfagkdnlpftpeelwsevkts
fpadltrqslylqdavfnqyhsetellrylhqleskdlalntsmiplgsctmklnataem
mpvtwpefgkihpfapagqtegyqilfaqleawlgeitgfdaislqpnagsqgeyaglqv
irqyhlsrgeeqrniclipesahgtnpasavmcgmqvvpvkcdgegnidvedltskaeky
gdrlaalmvtypsthgvfeatigticdivhrfggevymdganmnaqvglcrpadfgadvc
hlnlhktfciphggggpgmgpigvkshlqaflprtslnstaelqaedqsigmisaapygs
asilviswmyiammgpqgltkatevailsanymakrlenyypilfrgnnelvahecildl
rplkkqaaievedvakrlmdfgfhaptvswpvlgtmmvepteseslgeldrfcdamiaiy
qeaqaithgeidpadnplknaphtaqslicgewnhpysqeeaaypapwtkqfkfwpavgr
inntygdrhlvcscegmeaykeg

    Sequence, based on observed residues (ATOM records):
    >4lhdA (A:)
aiavdltkleeklapadsfldrhlgpgeteqrqmlqtlgfdtlgdlidqavppairfprs
lqlpasqseygaiaqlksiasknqvfrsyigmgyydtitppviqrnilenpgwytaytpy
qaeiaqgrleallnfqtmvmdltgleianaslldegtaaaeamalsygvskskanaffva
qdchpqtieviktranplgievivgdhhtfsfstsifgallqypatdgavydyrsfidka
hqhqalvtlaadplsltlltppgelgadiavgstqrfgiplgyggphaayfatkaeyqrk
mpgrivgvskdahgnpalrlalqtreqhirrdkatsnictaqvllavmasmygvyhgstg
lknialrihqltvllaiglkrlnyslnndyffdtlrvgvgeqsapailkaaegrginlrp
lvpgevgisldetvtvqdlldlwqvfagkdnlpftpeelwsevktsfpadltrqslylqd
avfnqyhsetellrylhqleskdlalntsmiplgsctmklnataemmpvtwpefgkihpf
apagqtegyqilfaqleawlgeitgfdaislqpnagsqgeyaglqvirqyhlsrgeeqrn
iclipesahgtnpasavmcgmqvvpvkcdgegnidvedltskaekygdrlaalmvtypst
hgvfeatigticdivhrfggevymdganmnaqvglcrpadfgadvchlnlhktfciphgg
ggpgmgpigvkshlqaflprtdqsigmisaapygsasilviswmyiammgpqgltkatev
ailsanymakrlenyypilfrgnnelvahecildlrplkkqaaievedvakrlmdfgfha
ptvswpvlgtmmvepteseslgeldrfcdamiaiyqeaqaithgeidpadnplknaphta
qslicgewnhpysqeeaaypapwtkqfkfwpavgrinntygdrhlvcscegm

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4lhdB (B:)
mpnlepavvvptseaiavdltkleeklapadsfldrhlgpgeteqrqmlqtlgfdtlgdl
idqavppairfprslqlpasqseygaiaqlksiasknqvfrsyigmgyydtitppviqrn
ilenpgwytaytpyqaeiaqgrleallnfqtmvmdltgleianaslldegtaaaeamals
ygvskskanaffvaqdchpqtieviktranplgievivgdhhtfsfstsifgallqypat
dgavydyrsfidkahqhqalvtlaadplsltlltppgelgadiavgstqrfgiplgyggp
haayfatkaeyqrkmpgrivgvskdahgnpalrlalqtreqhirrdkatsnictaqvlla
vmasmygvyhgstglknialrihqltvllaiglkrlnyslnndyffdtlrvgvgeqsapa
ilkaaegrginlrplvpgevgisldetvtvqdlldlwqvfagkdnlpftpeelwsevkts
fpadltrqslylqdavfnqyhsetellrylhqleskdlalntsmiplgsctmklnataem
mpvtwpefgkihpfapagqtegyqilfaqleawlgeitgfdaislqpnagsqgeyaglqv
irqyhlsrgeeqrniclipesahgtnpasavmcgmqvvpvkcdgegnidvedltskaeky
gdrlaalmvtypsthgvfeatigticdivhrfggevymdganmnaqvglcrpadfgadvc
hlnlhktfciphggggpgmgpigvkshlqaflprtslnstaelqaedqsigmisaapygs
asilviswmyiammgpqgltkatevailsanymakrlenyypilfrgnnelvahecildl
rplkkqaaievedvakrlmdfgfhaptvswpvlgtmmvepteseslgeldrfcdamiaiy
qeaqaithgeidpadnplknaphtaqslicgewnhpysqeeaaypapwtkqfkfwpavgr
inntygdrhlvcscegmeaykeg

    Sequence, based on observed residues (ATOM records):
    >4lhdB (B:)
aiavdltkleeklapadsfldrhlgpgeteqrqmlqtlgfdtlgdlidqavppairfprs
lqlpasqseygaiaqlksiasknqvfrsyigmgyydtitppviqrnilenpgwytaytpy
qaeiaqgrleallnfqtmvmdltgleianaslldegtaaaeamalsygvskskanaffva
qdchpqtieviktranplgievivgdhhtfsfstsifgallqypatdgavydyrsfidka
hqhqalvtlaadplsltlltppgelgadiavgstqrfgiplgyggphaayfatkaeyqrk
mpgrivgvskdahgnpalrlalqsnictaqvllavmasmygvyhgstglknialrihqlt
vllaiglkrlnyslnndyffdtlrvgvgeqsapailkaaegrginlrplvpgevgislde
tvtvqdlldlwqvfagkdnlpftpeelwsevktsfpadltrqslylqdavfnqyhsetel
lrylhqleskdlalntsmiplgsctmklnataemmpvtwpefgkihpfapagqtegyqil
faqleawlgeitgfdaislqpnagsqgeyaglqvirqyhlsrgeeqrniclipesahgtn
pasavmcgmqvvpvkcdgegnidvedltskaekygdrlaalmvtypsthgvfeatigtic
divhrfggevymdganmnaqvglcrpadfgadvchlnlhktfciphggggpgmgpigvks
hlqaflprtdqsigmisaapygsasilviswmyiammgpqgltkatevailsanymakrl
enyypilfrgnnelvahecildlrplkkqaaievedvakrlmdfgfhaptvswpvlgtmm
vepteseslgeldrfcdamiaiyqeaqaithgeidpadnplknaphtaqslicgewnhpy
sqeeaaypapwtkqfkfwpavgrinntygdrhlvcscegm