PDB entry 4lgt

View 4lgt on RCSB PDB site
Description: crystal structure of the catalytic domain of rlub in complex with a 21-nucleotide rna substrate
Deposited on 2013-06-28, released 2013-11-20
The last revision was dated 2019-07-17, with a file datestamp of 2019-07-12.
Experiment type: XRAY
Resolution: 1.3 Å
R-factor: N/A
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribosomal large subunit pseudouridine synthase B
    Species: Escherichia coli [TaxId:83333]
    Gene: rluB
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Ribosomal large subunit pseudouridine synthase B
    Species: Escherichia coli [TaxId:83333]
    Gene: rluB
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: stem-loop of 23S rRNA
    Species: synthetic, synthetic
  • Chain 'F':
    Compound: stem-loop of 23S rRNA
    Species: synthetic, synthetic
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4lgtA (A:)
    gpgsmseklqkvlaraghgsrreiesiieagrvsvdgkiaklgdrvevtpglkiridghl
    isvresaeqicrvlayykpegelctrndpegrptvfdrlpklrgarwiavgrldvntcgl
    llfttdgelanrlmhpsrevereyavrvfgqvddaklrdlsrgvqledgpaafktikfsg
    geginqwynvtltegrnrevrrlweavgvqvsrlirvrygdiplpkglprggwteldlaq
    tnylrelvelppets
    

    Sequence, based on observed residues (ATOM records):
    >4lgtA (A:)
    mseklqkvlaraghgsrreiesiieagrvsvdgkiaklgdrvevtpglkiridghlisvr
    esaeqicrvlayykpegelctrndpegrptvfdrlpklrgarwiavgrldvntcglllft
    tdgelanrlmhpsrevereyavrvfgqvddaklrdlsrgvqledgpaafktikfsggegi
    nqwynvtltegrnrevrrlweavgvqvsrlirvrygdiplpkglprggwteldlaqtnyl
    relvelppets
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4lgtD (D:)
    gpgsmseklqkvlaraghgsrreiesiieagrvsvdgkiaklgdrvevtpglkiridghl
    isvresaeqicrvlayykpegelctrndpegrptvfdrlpklrgarwiavgrldvntcgl
    llfttdgelanrlmhpsrevereyavrvfgqvddaklrdlsrgvqledgpaafktikfsg
    geginqwynvtltegrnrevrrlweavgvqvsrlirvrygdiplpkglprggwteldlaq
    tnylrelvelppets
    

    Sequence, based on observed residues (ATOM records):
    >4lgtD (D:)
    mseklqkvlaraghgsrreiesiieagrvsvdgkiaklgdrvevtpglkiridghlisvr
    esicrvlayykpegelctrndpegrptvfdrlpklrgarwiavgrldvntcglllfttdg
    elanrlmhpsrevereyavrvfgqvddaklrdlsrgvqledgpaafktikfsggeginqw
    ynvtltegrnrevrrlweavgvqvsrlirvrygdiplpkglprggwteldlaqtnylrel
    velppet
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.