PDB entry 4lfd

View 4lfd on RCSB PDB site
Description: Staphylococcus aureus sortase B-substrate complex
Deposited on 2013-06-26, released 2014-02-12
The last revision was dated 2014-04-16, with a file datestamp of 2014-04-11.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: 0.218
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: sortase B
    Species: Staphylococcus aureus [TaxId:367830]
    Gene: srtB, SAUSA300_1034
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2FHU6 (2-215)
      • expression tag (0-1)
  • Chain 'B':
    Compound: sortase B
    Species: Staphylococcus aureus [TaxId:367830]
    Gene: srtB, SAUSA300_1034
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2FHU6 (2-215)
      • expression tag (0-1)
  • Chain 'C':
    Compound: sortase B
    Species: Staphylococcus aureus [TaxId:367830]
    Gene: srtB, SAUSA300_1034
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2FHU6 (2-215)
      • expression tag (0-1)
  • Chain 'D':
    Compound: sortase B
    Species: Staphylococcus aureus [TaxId:367830]
    Gene: srtB, SAUSA300_1034
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2FHU6 (2-215)
      • expression tag (0-1)
  • Chain 'E':
    Compound: (cbz)npq(b27) peptide
    Database cross-references and differences (RAF-indexed):
    • PDB 4LFD (0-4)
  • Chain 'F':
    Compound: (cbz)npq(b27) peptide
    Database cross-references and differences (RAF-indexed):
    • PDB 4LFD (0-4)
  • Chain 'G':
    Compound: (cbz)npq(b27) peptide
    Database cross-references and differences (RAF-indexed):
    • PDB 4LFD (0-4)
  • Chain 'H':
    Compound: (cbz)npq(b27) peptide
    Database cross-references and differences (RAF-indexed):
    • PDB 4LFD (0-4)
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >4lfdA (A:)
smedkqeranyeklqqkfqmlmskhqehvrpqfeslekinkdivgwiklsgtslnypvlq
gktnhdylnldferehrrkgsifmdfrnelknlnhntilyghhvgdntmfdvledylkqs
fyekhkiiefdnkygkyqlqvfsayktttkdnyirtdfendqdyqqfldetkrksvinsd
vnvtvkdrimtlstcedaysettkrivvvakiikvs

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >4lfdB (B:)
smedkqeranyeklqqkfqmlmskhqehvrpqfeslekinkdivgwiklsgtslnypvlq
gktnhdylnldferehrrkgsifmdfrnelknlnhntilyghhvgdntmfdvledylkqs
fyekhkiiefdnkygkyqlqvfsayktttkdnyirtdfendqdyqqfldetkrksvinsd
vnvtvkdrimtlstcedaysettkrivvvakiikvs

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >4lfdC (C:)
smedkqeranyeklqqkfqmlmskhqehvrpqfeslekinkdivgwiklsgtslnypvlq
gktnhdylnldferehrrkgsifmdfrnelknlnhntilyghhvgdntmfdvledylkqs
fyekhkiiefdnkygkyqlqvfsayktttkdnyirtdfendqdyqqfldetkrksvinsd
vnvtvkdrimtlstcedaysettkrivvvakiikvs

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >4lfdD (D:)
smedkqeranyeklqqkfqmlmskhqehvrpqfeslekinkdivgwiklsgtslnypvlq
gktnhdylnldferehrrkgsifmdfrnelknlnhntilyghhvgdntmfdvledylkqs
fyekhkiiefdnkygkyqlqvfsayktttkdnyirtdfendqdyqqfldetkrksvinsd
vnvtvkdrimtlstcedaysettkrivvvakiikvs

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >4lfdE (E:)
xnpqx

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >4lfdF (F:)
xnpqx

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >4lfdG (G:)
xnpqx

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >4lfdH (H:)
xnpqx