PDB entry 4ldd

View 4ldd on RCSB PDB site
Description: Crystal Structure of Ebola virus VP40 Hexamer
Deposited on 2013-06-24, released 2013-08-21
The last revision was dated 2014-09-17, with a file datestamp of 2014-09-12.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.307
AEROSPACI score: 0.03 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: matrix protein vp40
    Species: Ebola virus [TaxId:186538]
    Gene: VP40
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: matrix protein vp40
    Species: Ebola virus [TaxId:186538]
    Gene: VP40
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: matrix protein vp40
    Species: Ebola virus [TaxId:186538]
    Gene: VP40
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4lddA (A:)
mahhhhhhvddddkgdtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlm
kqipiwlplgvadqktysfdsttaaimlasytithfgkatnplvrvnrlgpgipdhplrl
lrignqaflqefvlppvqlpqyftfdltalklitqplpaatwtddtptgsngalrpgisf
hpklrpillpnksgkkgnsadltspekiqaimtslqdfkivpidptknimgievpetlvh
kltgkkvtskngqpiipvllpkyigldpvapgdltmvitqdcdtchspaslpaviek

    Sequence, based on observed residues (ATOM records):
    >4lddA (A:)
dtpsnplrpiaddtidhashtpgsvssafileamvnvisgplmkqipiwlplgvadqkty
sfdsttaaimlasytithfgnplvrvnrlgpgipdhplrllrignqaflqefvlpplpqy
ftfdltalklitqplpa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4lddB (B:)
mahhhhhhvddddkgdtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlm
kqipiwlplgvadqktysfdsttaaimlasytithfgkatnplvrvnrlgpgipdhplrl
lrignqaflqefvlppvqlpqyftfdltalklitqplpaatwtddtptgsngalrpgisf
hpklrpillpnksgkkgnsadltspekiqaimtslqdfkivpidptknimgievpetlvh
kltgkkvtskngqpiipvllpkyigldpvapgdltmvitqdcdtchspaslpaviek

    Sequence, based on observed residues (ATOM records):
    >4lddB (B:)
dtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlmkqipiwlplgvadqk
tysfdsttaaimlasytithftnplvrvnrlgpgipdhplrllrignqaflqefvlppvq
lpqyftfdltalklitqplpaatwtdalrpgisfhpklrpillptspekiqaimtslqdf
kivpidptknimgievpetlvhklqpiipvllpkyiggdltmvitq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4lddC (C:)
mahhhhhhvddddkgdtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlm
kqipiwlplgvadqktysfdsttaaimlasytithfgkatnplvrvnrlgpgipdhplrl
lrignqaflqefvlppvqlpqyftfdltalklitqplpaatwtddtptgsngalrpgisf
hpklrpillpnksgkkgnsadltspekiqaimtslqdfkivpidptknimgievpetlvh
kltgkkvtskngqpiipvllpkyigldpvapgdltmvitqdcdtchspaslpaviek

    Sequence, based on observed residues (ATOM records):
    >4lddC (C:)
dtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlmkqipiwlplgvadqk
tysfdsttaaimlasytithfatnplvrvnrlgpgipdhplrllrignqaflqefvlppv
pqyftfdltalklitqplp