PDB entry 4ldb

View 4ldb on RCSB PDB site
Description: Crystal Structure of Ebola Virus VP40 Dimer
Class: viral protein
Keywords: viral matrix protein, viral budding, assembly, viral transcription regulation, VIRAL PROTEIN
Deposited on 2013-06-24, released 2013-08-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-09-04, with a file datestamp of 2013-08-30.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.247
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: matrix protein vp40
    Species: Ebola virus [TaxId:186538]
    Gene: VP40
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ldba1, d4ldba2
  • Chain 'B':
    Compound: matrix protein vp40
    Species: Ebola virus [TaxId:186538]
    Gene: VP40
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ldbb1, d4ldbb2
  • Chain 'C':
    Compound: matrix protein vp40
    Species: Ebola virus [TaxId:186538]
    Gene: VP40
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ldbc1
  • Chain 'D':
    Compound: matrix protein vp40
    Species: Ebola virus [TaxId:186538]
    Gene: VP40
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ldbd1

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ldbA (A:)
mahhhhhhvddddkgdtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlm
kqipiwlplgvadqktysfdsttaaimlasytithfgkatnplvrvnrlgpgipdhplrl
lrignqaflqefvlppvqlpqyftfdltalklitqplpaatwtddtptgsngalrpgisf
hpklrpillpnksgkkgnsadltspekiqaimtslqdfkivpidptknimgievpetlvh
kltgkkvtskngqpiipvllpkyigldpvapgdltmvitqdcdtchspaslpaviek

    Sequence, based on observed residues (ATOM records): (download) 
    >4ldbA (A:)
gdtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlmkqipiwlplgvadq
ktysfdsttaaimlasytithfgkatnplvrvnrlgpgipdhplrllrignqaflqefvl
ppvqlpqyftfdltalklitqplpaatwtddptgsngalrpgisfhpklrpillpnklts
pekiqaimtslqdfkivpidptknimgievpetlvhkltgkkvtskngqpiipvllpkyi
gldpvapgdltmvitqdcdtchspas

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ldbB (B:)
mahhhhhhvddddkgdtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlm
kqipiwlplgvadqktysfdsttaaimlasytithfgkatnplvrvnrlgpgipdhplrl
lrignqaflqefvlppvqlpqyftfdltalklitqplpaatwtddtptgsngalrpgisf
hpklrpillpnksgkkgnsadltspekiqaimtslqdfkivpidptknimgievpetlvh
kltgkkvtskngqpiipvllpkyigldpvapgdltmvitqdcdtchspaslpaviek

    Sequence, based on observed residues (ATOM records): (download) 
    >4ldbB (B:)
gdtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlmkqipiwlplgvadq
ktysfdsttaaimlasytithfgkatnplvrvnrlgpgipdhplrllrignqaflqefvl
ppvqlpqyftfdltalklitqplpaatwtdgalrpgisfhpklrpillpnltspekiqai
mtslqdfkivpidptknimgievpetlvhkltgkkvtskngqpiipvllpkyiggdltmv
itqdcdtch

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ldbC (C:)
mahhhhhhvddddkgdtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlm
kqipiwlplgvadqktysfdsttaaimlasytithfgkatnplvrvnrlgpgipdhplrl
lrignqaflqefvlppvqlpqyftfdltalklitqplpaatwtddtptgsngalrpgisf
hpklrpillpnksgkkgnsadltspekiqaimtslqdfkivpidptknimgievpetlvh
kltgkkvtskngqpiipvllpkyigldpvapgdltmvitqdcdtchspaslpaviek

    Sequence, based on observed residues (ATOM records): (download) 
    >4ldbC (C:)
dtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlmkqipiwlplgvadqk
tysfdsttaaimlasytithfgkatnplvrvnrlgpgipdhplrllrignqaflqefvlp
pvqlpqyftfdltalklitqplpaatwtalrpgisfhpklrpillpnpekiqaimtslqd
fkivpidptknimgievpetlvhkltgqpiipvllpkyidltmvitdtchspaslpa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ldbD (D:)
mahhhhhhvddddkgdtpsnplrpiaddtidhashtpgsvssafileamvnvisgpkvlm
kqipiwlplgvadqktysfdsttaaimlasytithfgkatnplvrvnrlgpgipdhplrl
lrignqaflqefvlppvqlpqyftfdltalklitqplpaatwtddtptgsngalrpgisf
hpklrpillpnksgkkgnsadltspekiqaimtslqdfkivpidptknimgievpetlvh
kltgkkvtskngqpiipvllpkyigldpvapgdltmvitqdcdtchspaslpaviek

    Sequence, based on observed residues (ATOM records): (download) 
    >4ldbD (D:)
dtpsnplrpiaddtidhashtpgsvssafileamvnvimkqipiwlplgvadqktysfds
ttaaimlasytithfgkatnplvrvnrlgpgipdhplrllrignqaflqefvlppvqlpq
yftfdltalklitqplpaatwtgalrpgisfhpklrpillpntspekiqaimtslqdfki
vpidptknimgievpetlvhngqpiipvllpkyigdltmvitqdcdtchspaslp