PDB entry 4ld9

View 4ld9 on RCSB PDB site
Description: Crystal structure of the N-terminally acetylated BAH domain of Sir3 bound to the nucleosome core particle
Deposited on 2013-06-24, released 2013-08-14
The last revision was dated 2013-09-18, with a file datestamp of 2013-09-13.
Experiment type: XRAY
Resolution: 3.31 Å
R-factor: 0.24
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Histone H3.2
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Gene: LOC494591
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Histone H2B 1.1
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Histone H3.2
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Gene: LOC494591
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Histone H2B 1.1
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Widom 601 sequence reverse
    Species: synthetic, synthetic
  • Chain 'J':
    Compound: Widom 601 sequence forward
    Species: synthetic, synthetic
  • Chain 'K':
    Compound: Regulatory protein SIR3
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: SIR3, CMT1, MAR2, STE8, YLR442C, L9753.10
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Regulatory protein SIR3
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: SIR3, CMT1, MAR2, STE8, YLR442C, L9753.10
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4ld9A (A:)
martkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkste
llirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlcaihakrvti
mpkdiqlarrirgera

    Sequence, based on observed residues (ATOM records):
    >4ld9A (A:)
kphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeas
eaylvglfedtnlcaihakrvtimpkdiqlarrirge

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4ld9B (B:)
msgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlk
vflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records):
    >4ld9B (B:)
kggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavt
ytehakrktvtamdvvyalkrqgrtlygf

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4ld9C (C:)
msgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylt
aeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk
tessksaksk

    Sequence, based on observed residues (ATOM records):
    >4ld9C (C:)
raglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktrii
prhlqlavrndeelnkllgrvtiaqggvlpniqsvllp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4ld9D (D:)
mpepaksapapkkgskkavtktqkkdgkkrrksrkesyaiyvykvlkqvhpdtgisskam
simnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavt
kytsak

    Sequence, based on observed residues (ATOM records):
    >4ld9D (D:)
yaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqt
avrlllpgelakhavsegtkavtkyt

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4ld9E (E:)
martkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkste
llirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlcaihakrvti
mpkdiqlarrirgera

    Sequence, based on observed residues (ATOM records):
    >4ld9E (E:)
gtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvgl
fedtnlcaihakrvtimpkdiqlarrirge

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4ld9F (F:)
msgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlk
vflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records):
    >4ld9F (F:)
hrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehak
rktvtamdvvyalkrqgrtlygf

  • Chain 'G':
    Sequence, based on SEQRES records:
    >4ld9G (G:)
msgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylt
aeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk
tessksaksk

    Sequence, based on observed residues (ATOM records):
    >4ld9G (G:)
ssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktr
iiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllp

  • Chain 'H':
    Sequence, based on SEQRES records:
    >4ld9H (H:)
mpepaksapapkkgskkavtktqkkdgkkrrksrkesyaiyvykvlkqvhpdtgisskam
simnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavt
kytsak

    Sequence, based on observed residues (ATOM records):
    >4ld9H (H:)
kesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsre
iqtavrlllpgelakhavsegtkavtky

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    Sequence, based on SEQRES records:
    >4ld9K (K:)
aktlkdldgwqviitddqgrviddnnrrrsrkrggenvflkrisdglsfgkgesvifndn
vtetysvyliheirlntlnnvveiwvfsylrwfelkpklyyeqfrpdlikedhplefykd
kffnevnkselyltaelseiwlkdfiavgqilpesqwndssidkiedrdflvryacepta
ekfvpidifqiirrvkemepkqsdeylkrvsvpvsgqktnrqvmhkmgkhhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ld9K (K:)
aktlkdldgwqviitddqgrviddnnrrrrggenvflkrisdglsfgkgesvifndnvte
tysvyliheirlntlnnvveiwvfsylrwfelkpklyyeqfrpdlikedhplefykdkff
nevnkselyltaelseiwlkdfiavgqilpesqwndssikiedrdflvryaceptaekfv
pidifqiirrvkemepkqsdeylkrvsvpv

  • Chain 'L':
    Sequence, based on SEQRES records:
    >4ld9L (L:)
aktlkdldgwqviitddqgrviddnnrrrsrkrggenvflkrisdglsfgkgesvifndn
vtetysvyliheirlntlnnvveiwvfsylrwfelkpklyyeqfrpdlikedhplefykd
kffnevnkselyltaelseiwlkdfiavgqilpesqwndssidkiedrdflvryacepta
ekfvpidifqiirrvkemepkqsdeylkrvsvpvsgqktnrqvmhkmgkhhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ld9L (L:)
aktlkdldgwqviitddqgrviddnnrrenvflkrisdglsfgkgesvifndnvtetysv
yliheirlntlnnvveiwvfsylrwfelkpklyyeqfrpdlikedhplefykdkffnevn
kselyltaelseiwlkdfiavgqilpesqwndssidkiedrdflvryaceptaekfvpid
ifqiirrvkemepkqsdeylkrvsv