PDB entry 4ld0

View 4ld0 on RCSB PDB site
Description: T. thermophilus RuvC in complex with Holliday junction substrate
Class: hydrolase/DNA
Keywords: RNase H fold, nuclease, DNA, HYDROLASE-DNA complex
Deposited on 2013-06-24, released 2013-09-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 3.75 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Crossover junction endodeoxyribonuclease RuvC
    Species: Thermus thermophilus [TaxId:300852]
    Gene: ruvC, TTHA1090
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5SJC4 (3-168)
      • engineered mutation (72)
    Domains in SCOPe 2.08: d4ld0a_
  • Chain 'B':
    Compound: Crossover junction endodeoxyribonuclease RuvC
    Species: Thermus thermophilus [TaxId:300852]
    Gene: ruvC, TTHA1090
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5SJC4 (3-168)
      • expression tag (2)
      • engineered mutation (72)
    Domains in SCOPe 2.08: d4ld0b1, d4ld0b2
  • Chain 'C':
    Compound: DNA 31-mer
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: DNA 13-mer
    Species: synthetic, synthetic
  • Chain 'F':
    Compound: DNA 11-mer
    Species: synthetic, synthetic

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ld0A (A:)
gphmvvagidpgithlglgvvavegkgalkarllhgevvktspqepakervgriharvle
vlhrfrpeavavqeqffyrqnelaykvgwalgavlvaafeagvpvyaygpmqvkqalagh
ghaakeevalmvrgilglkeaprpshladalaialthafyarmgtakpl

    Sequence, based on observed residues (ATOM records): (download) 
    >4ld0A (A:)
mvvagidpgithlglgvvavegalkarllhgevvktspqepakervgriharvlevlhrf
rpeavavqeqffyrqnelaykvgwalgavlvaafeagvpvyaygpmqvkqalakeevalm
vrgilglkeaprpshladalaialthafyarmgtakpl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ld0B (B:)
gphmvvagidpgithlglgvvavegkgalkarllhgevvktspqepakervgriharvle
vlhrfrpeavavqeqffyrqnelaykvgwalgavlvaafeagvpvyaygpmqvkqalagh
ghaakeevalmvrgilglkeaprpshladalaialthafyarmgtakpl

    Sequence, based on observed residues (ATOM records): (download) 
    >4ld0B (B:)
hmvvagidpgithlglgvvavlkarllhgevvktspqepakervgriharvlevlhrfrp
eavavqeqffyrqnelaykvgwalgavlvaafeagvpvyaygpmqvkqalaakeevalmv
rgilglkeaprpshladalaialthafyarmgtakpl

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'F':
    No sequence available.