PDB entry 4lcy

View 4lcy on RCSB PDB site
Description: Crystal structure of HLA-b46 at 1.6 angstrom resolution
Deposited on 2013-06-24, released 2014-06-25
The last revision was dated 2014-06-25, with a file datestamp of 2014-06-20.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.174
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility antigen, B-46 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA, HLA-B, HLAB
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, Beta 2 microglobulin, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • expression tag (0)
  • Chain 'C':
    Compound: dengue1 poly peptide
    Species: Dengue virus 1, synthetic [TaxId:11053]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LCY (0-8)
  • Chain 'F':
    Compound: HLA class I histocompatibility antigen, B-46 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA, HLA-B, HLAB
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, Beta 2 microglobulin, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • expression tag (0)
  • Chain 'J':
    Compound: dengue1 poly peptide
    Species: Dengue virus 1, synthetic [TaxId:11053]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LCY (0-8)
  • Heterogens: NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >4lcyA (A:)
gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprmaprapwieqegpeyw
dretqkykrqaqtdrvslrnlrgyynqseagshtlqrmygcdvgpdgrllrghdqsaydg
kdyialnedlsswtaadtaaqitqrkweaareaeqwrayleglcvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >4lcyB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >4lcyC (C:)
ftmrllspv

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >4lcyF (F:)
gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprmaprapwieqegpeyw
dretqkykrqaqtdrvslrnlrgyynqseagshtlqrmygcdvgpdgrllrghdqsaydg
kdyialnedlsswtaadtaaqitqrkweaareaeqwrayleglcvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrw

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >4lcyH (H:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >4lcyJ (J:)
ftmrllspv