PDB entry 4l9z

View 4l9z on RCSB PDB site
Description: Crystal Structure of Rhodobacter sphaeroides malyl-CoA lyase in complex with magnesium, oxalate, and CoA
Deposited on 2013-06-18, released 2013-12-04
The last revision was dated 2013-12-04, with a file datestamp of 2013-11-29.
Experiment type: XRAY
Resolution: 2.01 Å
R-factor: 0.17
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Heterogens: COA, OXL, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4l9zA (A:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9zA (A:)
frlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniiea
ingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalvt
aierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgigg
tqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsat
lgmvgkwaihpkqvalanevftpsetavteareilaamdaakargegatvykgrlvdias
ikqaevivrqaem

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4l9zB (B:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9zB (B:)
sfrlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniie
aingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalv
taierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgig
gtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsa
tlgmvgkwaihpkqvalanevftpsetavteareilaamdaakargegatvykgrlvdia
sikqaevivrqaem

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4l9zC (C:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9zC (C:)
sfrlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniie
aingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalv
taierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgig
gtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsa
tlgmvgkwaihpkqvalanevftpsetavteareilaamdaakargegatvykgrlvdia
sikqaevivrqaem

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4l9zD (D:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9zD (D:)
sfrlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniie
aingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalv
taierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgig
gtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsa
tlgmvgkwaihpkqvalanevftpsetavteareilaamdaakargegatvykgrlvdia
sikqaevivrqaem

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4l9zE (E:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9zE (E:)
frlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniiea
ingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalvt
aierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgigg
tqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsat
lgmvgkwaihpkqvalanevftpsetavteareilaamdaakargegatvykgrlvdias
ikqaevivrqaem

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4l9zF (F:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9zF (F:)
frlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniiea
ingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalvt
aierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgigg
tqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsat
lgmvgkwaihpkqvalanevftpsetavteareilaamdaakargegatvykgrlvdias
ikqaevivrqaem