PDB entry 4l9y

View 4l9y on RCSB PDB site
Description: Crystal Structure of Rhodobacter sphaeroides malyl-CoA lyase in complex with magnesium, glyoxylate, and propionyl-CoA
Deposited on 2013-06-18, released 2013-12-04
The last revision was dated 2013-12-04, with a file datestamp of 2013-11-29.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.177
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Malyl-CoA lyase
    Species: Rhodobacter sphaeroides [TaxId:272943]
    Gene: mcl1, RHOS4_03500, RSP_1771
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, CL, 1VU, GLV, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4l9yA (A:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9yA (A:)
sfrlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniie
aingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalv
taierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgig
gtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsa
tlgmvgkwaihpkqvalanevftpsetavteareilaamdaakargegatvykgrlvdia
sikqaevivrqaem

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4l9yB (B:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9yB (B:)
sfrlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniie
aingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalv
taierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgig
gtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsa
tlgmvgkwaihpkqvalanevftp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4l9yC (C:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9yC (C:)
sfrlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniie
aingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalv
taierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgig
gtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsa
tlgmvgkwaihpkqvalanevftpsetavteareilaamdaakargegatvykgrlvdia
sikqaevivrqaemis

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4l9yD (D:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9yD (D:)
sfrlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniie
aingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalv
taierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgig
gtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsa
tlgmvgkwaihpkqvalanevftps

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4l9yE (E:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9yE (E:)
sfrlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniie
aingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalv
taierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgig
gtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsa
tlgmvgkwaihpkqvalanevftps

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4l9yF (F:)
mghhhhhhhhhhssghiegrhmsfrlqpapparpnrcqlfgpgsrpalfekmaasaadvi
nldledsvapddkaqaraniieaingldwgrkylsvringldtpfwyrdvvdlleqagdr
ldqimipkvgcaadvyavdalvtaierakgrtkplsfeviiesaagiahveeiaassprl
qamslgaadfaasmgmqttgiggtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilp
vdgpfgdfsddegfraqarrsatlgmvgkwaihpkqvalanevftpsetavteareilaa
mdaakargegatvykgrlvdiasikqaevivrqaemisa

    Sequence, based on observed residues (ATOM records):
    >4l9yF (F:)
sfrlqpapparpnrcqlfgpgsrpalfekmaasaadvinldledsvapddkaqaraniie
aingldwgrkylsvringldtpfwyrdvvdlleqagdrldqimipkvgcaadvyavdalv
taierakgrtkplsfeviiesaagiahveeiaassprlqamslgaadfaasmgmqttgig
gtqenyymlhdgqkhwsdpwhwaqaaivaacrthgilpvdgpfgdfsddegfraqarrsa
tlgmvgkwaihpkqvalanevftpsetavteareilaamdaakargegatvykgrlvdia
sikqaeviv