PDB entry 4l8r

View 4l8r on RCSB PDB site
Description: structure of mrna stem-loop, human stem-loop binding protein and 3'hexo ternary complex
Deposited on 2013-06-17, released 2013-07-10
The last revision was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histone mRNA stem-loop
    Species: synthetic, synthetic
  • Chain 'B':
    Compound: 3'-5' exoribonuclease 1
    Species: Homo sapiens [TaxId:9606]
    Gene: 3'EXO, ERI1, THEX1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Histone RNA hairpin-binding protein
    Species: Homo sapiens [TaxId:9606]
    Gene: HBP, SLBP
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: histone mRNA stem-loop
    Species: synthetic, synthetic
  • Chain 'E':
    Compound: 3'-5' exoribonuclease 1
    Species: Homo sapiens [TaxId:9606]
    Gene: 3'EXO, ERI1, THEX1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8IV48 (Start-294)
      • expression tag (295)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4l8rB (B:)
tssasdfsdpvykeiaitngcinrmskeelraklsefkletrgvkdvlkkrlknyykkqk
lmlkesnfadsyydyiciidfeatceegnppefvheiiefpvvllnthtleiedtfqqyv
rpeintqlsdfcisltgitqdqvdradtfpqvlkkvidwmklkelgtkykyslltdgswd
mskflniqcqlsrlkyppfakkwinirksygnfykvprsqtkltimleklgmdydgrphc
glddskniariavrmlqdgcelrinekmhagqlmsvssslpiegtpppqmphfrklehhh
hhh

    Sequence, based on observed residues (ATOM records):
    >4l8rB (B:)
dpvykeiaitngcinrmskeelraklsefkletrgvkdvlkkrlknyykkqklmdsyydy
iciidfeatceegnppefvheiiefpvvllnthtleiedtfqqyvrpeintqlsdfcisl
tgitqdqvdradtfpqvlkkvidwmklkelgtkykyslltdgswdmskflniqcqlsrlk
yppfakkwinirksygnfykvqtkltimleklgmdydgrphcglddskniariavrmlqd
gcelrinekmhagqlmsvssslpiegtpppqmphfr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4l8rC (C:)
mgsshhhhhhssglvprgshmpadfetdesvlmrrqkqinygkntiaydryikevprhlr
qpgihpktpnkfkkysrrswdqqiklwkvalhfwdppaeegcdlqeihpvdlesaessse

    Sequence, based on observed residues (ATOM records):
    >4l8rC (C:)
dfetdesvlmrrqkqinygkntiaydryikevpgihpktpnkfkkysrrswdqqiklwkv
alhfwdp

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4l8rE (E:)
tssasdfsdpvykeiaitngcinrmskeelraklsefkletrgvkdvlkkrlknyykkqk
lmlkesnfadsyydyiciidfeatceegnppefvheiiefpvvllnthtleiedtfqqyv
rpeintqlsdfcisltgitqdqvdradtfpqvlkkvidwmklkelgtkykyslltdgswd
mskflniqcqlsrlkyppfakkwinirksygnfykvprsqtkltimleklgmdydgrphc
glddskniariavrmlqdgcelrinekmhagqlmsvssslpiegtpppqmphfrklehhh
hhh

    Sequence, based on observed residues (ATOM records):
    >4l8rE (E:)
pvykeiaitngcinrmskeelraklsefkletrgvkdvlkkrlknyykkqklmsyydyic
iidfeatceegnppefvheiiefpvvllnthtleiedtfqqyvrpeintqlsdfcisltg
itqdqvdradtfpqvlkkvidwmklkelgtkykyslltdgswdmskflniqcqlsrlkyp
pfakkwinirksygnfyktkltimleklgmdydgrphcglddskniariavrmlqdgcel
rinekmhagqlmsvssslpiegtpppqmphfrkl