PDB entry 4l8k

View 4l8k on RCSB PDB site
Description: crystal structure of a putative peptidase (parmer_02772) from parabacteroides merdae atcc 43184 at 2.26 a resolution
Deposited on 2013-06-17, released 2013-07-03
The last revision was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 2.26 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative peptidase
    Species: Parabacteroides merdae [TaxId:411477]
    Gene: PARMER_02772, ZP_02032754.1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Putative peptidase
    Species: Parabacteroides merdae [TaxId:411477]
    Gene: PARMER_02772, ZP_02032754.1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Putative peptidase
    Species: Parabacteroides merdae [TaxId:411477]
    Gene: PARMER_02772, ZP_02032754.1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Putative peptidase
    Species: Parabacteroides merdae [TaxId:411477]
    Gene: PARMER_02772, ZP_02032754.1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PO4, MPD, CL, MRD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4l8kA (A:)
gtkynssprdnfealwrimdenycffafkdvdwddvydrynllvkdtmnqyelfdilgkm
laevkdghtnlissfdmsrywawyedypanfykeiqdnylgtdykiaggmkykrladdqi
gyvyygsfssgvgennldymfahfkeckglifdvrdngggsmlysdriasrfleeriltg
ytqykkgnghndftqpnpvylspsdrtrwlrpvivltnrhsysatndfvnvmrllpqvtv
mgdrtgggsglpfsselpngwsvrfsacpvldvnkqhtefgidpdtavaitgedimkgrd
tiieaaiglllakgdsaisy

    Sequence, based on observed residues (ATOM records):
    >4l8kA (A:)
ssprdnfealwrimdenycffafkdvdwddvydrynllvkdtmnqyelfdilgkmlaevk
dghtnlissfdmsrywawyedypanfykeiqdnylgtdykiaggmkykrladdqigyvyy
gsfssgvgennldymfahfkeckglifdvrdngggsmlysdriasrfleeriltgytqyk
kgnghndftqpnpvylspsdrtrwlrpvivltnrhsysatndfvnvmrllpqvtvmgdrt
gggsglpfsselpngwsvrfsacpvldvnkqhtefgidpdtavaitgedimkgrdtiiea
aiglllakgdsaisy

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4l8kB (B:)
gtkynssprdnfealwrimdenycffafkdvdwddvydrynllvkdtmnqyelfdilgkm
laevkdghtnlissfdmsrywawyedypanfykeiqdnylgtdykiaggmkykrladdqi
gyvyygsfssgvgennldymfahfkeckglifdvrdngggsmlysdriasrfleeriltg
ytqykkgnghndftqpnpvylspsdrtrwlrpvivltnrhsysatndfvnvmrllpqvtv
mgdrtgggsglpfsselpngwsvrfsacpvldvnkqhtefgidpdtavaitgedimkgrd
tiieaaiglllakgdsaisy

    Sequence, based on observed residues (ATOM records):
    >4l8kB (B:)
nssprdnfealwrimdenycffafkdvdwddvydrynllvkdtmnqyelfdilgkmlaev
kdghtnlissfdmsrywawyedypanfykeiqdnylgtdykiaggmkykrladdqigyvy
ygsfssgvgennldymfahfkeckglifdvrdngggsmlysdriasrfleeriltgytqy
kkgnghndftqpnpvylspsdrtrwlrpvivltnrhsysatndfvnvmrllpqvtvmgdr
tgggsglpfsselpngwsvrfsacpvldvnkqhtefgidpdtavaitgedimkgrdtiie
aaiglllakgdsais

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4l8kC (C:)
gtkynssprdnfealwrimdenycffafkdvdwddvydrynllvkdtmnqyelfdilgkm
laevkdghtnlissfdmsrywawyedypanfykeiqdnylgtdykiaggmkykrladdqi
gyvyygsfssgvgennldymfahfkeckglifdvrdngggsmlysdriasrfleeriltg
ytqykkgnghndftqpnpvylspsdrtrwlrpvivltnrhsysatndfvnvmrllpqvtv
mgdrtgggsglpfsselpngwsvrfsacpvldvnkqhtefgidpdtavaitgedimkgrd
tiieaaiglllakgdsaisy

    Sequence, based on observed residues (ATOM records):
    >4l8kC (C:)
nssprdnfealwrimdenycffafkdvdwddvydrynllvkdtmnqyelfdilgkmlaev
kdghtnlissfdmsrywawyedypanfykeiqdnylgtdykiaggmkykrladdqigyvy
ygsfssgvgennldymfahfkeckglifdvrdngggsmlysdriasrfleeriltgytqy
kkgnghndftqpnpvylspsdrtrwlrpvivltnrhsysatndfvnvmrllpqvtvmgdr
tgggsglpfsselpngwsvrfsacpvldvnkqhtefgidpdtavaitgedimkgrdtiie
aaiglllak

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4l8kD (D:)
gtkynssprdnfealwrimdenycffafkdvdwddvydrynllvkdtmnqyelfdilgkm
laevkdghtnlissfdmsrywawyedypanfykeiqdnylgtdykiaggmkykrladdqi
gyvyygsfssgvgennldymfahfkeckglifdvrdngggsmlysdriasrfleeriltg
ytqykkgnghndftqpnpvylspsdrtrwlrpvivltnrhsysatndfvnvmrllpqvtv
mgdrtgggsglpfsselpngwsvrfsacpvldvnkqhtefgidpdtavaitgedimkgrd
tiieaaiglllakgdsaisy

    Sequence, based on observed residues (ATOM records):
    >4l8kD (D:)
ssprdnfealwrimdenycffafkdvdwddvydrynllvkdtmnqyelfdilgkmlaevk
dghtnlissfdmsrywawyedypanfykeiqdnylgtdykiaggmkykrladdqigyvyy
gsfssgvgennldymfahfkeckglifdvrdngggsmlysdriasrfleeriltgytqyk
kgnghndftqpnpvylspsdrtrwlrpvivltnrhsysatndfvnvmrllpqvtvmgdrt
gggsglpfsselpngwsvrfsacpvldvnkqhtefgidpdtavaitgedimkgrdtiiea
aigllla