PDB entry 4l6d

View 4l6d on RCSB PDB site
Description: Crystal structure of 5-carboxyvanillate decarboxylase from Sphingomonas paucimobilis complexed with vanillic acid
Deposited on 2013-06-12, released 2013-11-13
The last revision was dated 2013-11-13, with a file datestamp of 2013-11-08.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: 0.147
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'B':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'C':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'D':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'E':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'F':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'G':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'H':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Heterogens: MN, VNL, EPE, GOL, PEG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >4l6dA (A:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >4l6dB (B:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >4l6dC (C:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >4l6dD (D:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >4l6dE (E:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >4l6dF (F:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >4l6dG (G:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >4l6dH (H:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit