PDB entry 4l1u

View 4l1u on RCSB PDB site
Description: crystal structure of human rtf1 plus3 domain in complex with spt5 ctr phosphopeptide
Deposited on 2013-06-03, released 2013-10-02
The last revision was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.42 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA polymerase-associated protein RTF1 homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: KIAA0252, RTF1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92541 (6-End)
      • expression tag (2-5)
  • Chain 'B':
    Compound: RNA polymerase-associated protein RTF1 homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: KIAA0252, RTF1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92541 (6-End)
      • expression tag (3-5)
  • Chain 'C':
    Compound: RNA polymerase-associated protein RTF1 homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: KIAA0252, RTF1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92541 (6-End)
      • expression tag (3-5)
  • Chain 'D':
    Compound: RNA polymerase-associated protein RTF1 homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: KIAA0252, RTF1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92541 (6-137)
      • expression tag (2-5)
  • Chain 'E':
    Compound: RNA polymerase-associated protein RTF1 homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: KIAA0252, RTF1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92541 (6-End)
      • expression tag (2-5)
  • Chain 'F':
    Compound: RNA polymerase-associated protein RTF1 homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: KIAA0252, RTF1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92541 (6-End)
      • expression tag (2-5)
  • Chain 'G':
    Compound: Transcription elongation factor SPT5
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Transcription elongation factor SPT5
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Transcription elongation factor SPT5
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Transcription elongation factor SPT5
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4l1uA (A:)
gdithmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigignhnskpvyrvaeit
gvvetakvyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmql
ptldeinkkelsikealn

    Sequence, based on observed residues (ATOM records):
    >4l1uA (A:)
ithmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigignvyrvaeitgvvetak
vyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmqlptldein
kkelsikeal

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4l1uB (B:)
gdithmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigignhnskpvyrvaeit
gvvetakvyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmql
ptldeinkkelsikealn

    Sequence, based on observed residues (ATOM records):
    >4l1uB (B:)
thmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigignhnskpvyrvaeitgvv
etakvyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmqlptl
deinkkelsikeal

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4l1uC (C:)
gdithmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigignhnskpvyrvaeit
gvvetakvyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmql
ptldeinkkelsikealn

    Sequence, based on observed residues (ATOM records):
    >4l1uC (C:)
thmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigigkpvyrvaeitgvvetak
vyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmqlptldein
kkelsikeal

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4l1uD (D:)
gdithmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigignhnskpvyrvaeit
gvvetakvyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmql
ptldeinkkelsikealn

    Sequence, based on observed residues (ATOM records):
    >4l1uD (D:)
ithmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigignhnskpvyrvaeitgv
vetakvyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmqlpt
ldeinkkelsikealn

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4l1uE (E:)
gdithmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigignhnskpvyrvaeit
gvvetakvyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmql
ptldeinkkelsikealn

    Sequence, based on observed residues (ATOM records):
    >4l1uE (E:)
ithmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigignhnskpvyrvaeitgv
vetakvyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmqlpt
ldeinkkelsikea

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4l1uF (F:)
gdithmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigignhnskpvyrvaeit
gvvetakvyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmql
ptldeinkkelsikealn

    Sequence, based on observed residues (ATOM records):
    >4l1uF (F:)
ithmvslpeelnrvrlsrhklerwchmpffaktvtgcfvrigignhnskpvyrvaeitgv
vetakvyqlggtrtnkglqlrhgndqrvfrlefvsnqeftesefmkwkeamfsagmqlpt
ldeinkkelsikea

  • Chain 'G':
    Sequence, based on SEQRES records:
    >4l1uG (G:)
ygsgsrtpmygsq

    Sequence, based on observed residues (ATOM records):
    >4l1uG (G:)
gsrtpmyg

  • Chain 'H':
    Sequence, based on SEQRES records:
    >4l1uH (H:)
ygsgsrtpmygsq

    Sequence, based on observed residues (ATOM records):
    >4l1uH (H:)
sgsrtpmygsq

  • Chain 'I':
    Sequence, based on SEQRES records:
    >4l1uI (I:)
ygsgsrtpmygsq

    Sequence, based on observed residues (ATOM records):
    >4l1uI (I:)
rtpmy

  • Chain 'J':
    Sequence, based on SEQRES records:
    >4l1uJ (J:)
ygsgsrtpmygsq

    Sequence, based on observed residues (ATOM records):
    >4l1uJ (J:)
srtpm