PDB entry 4l1r

View 4l1r on RCSB PDB site
Description: Glycoprotein B from Herpes Simplex Virus type 1, A549T Rate-of-Entry mutant, low-pH
Class: viral protein
Keywords: Coiled-Coil, envelope glycoprotein, membrane fusion, viral protein, rate of entry, entry rate, Pleckstrin homology domain, Viral Entry, Heparan sulfate
Deposited on 2013-06-03, released 2013-06-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 3.03 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Envelope glycoprotein B
    Species: Human herpesvirus 1 [TaxId:10306]
    Gene: GB, UL27
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06437
      • see remark 999 (285)
      • see remark 999 (415)
      • engineered mutation (521)
    Domains in SCOPe 2.08: d4l1ra_
  • Chain 'B':
    Compound: Envelope glycoprotein B
    Species: Human herpesvirus 1 [TaxId:10306]
    Gene: GB, UL27
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06437
      • see remark 999 (285)
      • see remark 999 (415)
      • engineered mutation (521)
    Domains in SCOPe 2.08: d4l1rb_
  • Heterogens: NAG, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4l1rA (A:)
dpaaptspgtpgvaaatqaanggpatpappalgaaptgdpkpkknkkpknptpprpagdn
atvaaghatlrehlrdikaentdanfyvcppptgatvvqfeqprrcptrpegqnytegia
vvfkeniapykfkatmyykdvtvsqvwfghrysqfmgifedrapvpfeevidkinakgvc
rstakyvrnnlettafhrddhetdmelkpanaatrtsrgwhttdlkynpsrveafhrygt
tvnciveevdarsvypydefvlatgdfvymspfygyregshtehtsyaadrfkqvdgfya
rdlttkaratapttrnllttpkftvawdwvpkrpsvctmtkwqevdemlrseyggsfrfs
sdaisttfttnlteyplsrvdlgdcigkdardamdrifarrynathikvgqpqyylangg
fliayqpllsntlaelyvrehlreqsrkppnptppppgasanasverikttssiefarlq
ftynhiqrhvndmlgrvaiawcelqnheltlwnearklnpntiasvtvgrrvsarmlgdv
mavstcvpvaadnvivqnsmrissrpgacysrplvsfryedqgplvegqlgennelrltr
daiepctvghrryftfgggyvyfeeyayshqlsradittvstfidlnitmledhefvple
vytrheikdsglldytevqrrnqlhdlrfadidtvihadanaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4l1rA (A:)
dikaentdanfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkat
myykdvtvsqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnletta
fhrddhetdmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvy
pydefvlatgdfvymspfygyregshtehtsyaadrfkqvdgfyardlttkaratapttr
nllttpkftvawdwvpkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnltey
plsrvdlgdcigkdardamdrifarrynathikvgqpqyylanggfliayqpllsntlae
lyvrehlreqsrkppverikttssiefarlqftynhiqrhvndmlgrvaiawcelqnhel
tlwnearklnpntiasvtvgrrvsarmlgdvmavstcvpvaadnvivqnsmrissrpgac
ysrplvsfryedqgplvegqlgennelrltrdaiepctvghrryftfgggyvyfeeyays
hqlsradittvstfidlnitmledhefvplevytrheikdsglldytevqrrnqlhdlrf
adidtvih

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4l1rB (B:)
dpaaptspgtpgvaaatqaanggpatpappalgaaptgdpkpkknkkpknptpprpagdn
atvaaghatlrehlrdikaentdanfyvcppptgatvvqfeqprrcptrpegqnytegia
vvfkeniapykfkatmyykdvtvsqvwfghrysqfmgifedrapvpfeevidkinakgvc
rstakyvrnnlettafhrddhetdmelkpanaatrtsrgwhttdlkynpsrveafhrygt
tvnciveevdarsvypydefvlatgdfvymspfygyregshtehtsyaadrfkqvdgfya
rdlttkaratapttrnllttpkftvawdwvpkrpsvctmtkwqevdemlrseyggsfrfs
sdaisttfttnlteyplsrvdlgdcigkdardamdrifarrynathikvgqpqyylangg
fliayqpllsntlaelyvrehlreqsrkppnptppppgasanasverikttssiefarlq
ftynhiqrhvndmlgrvaiawcelqnheltlwnearklnpntiasvtvgrrvsarmlgdv
mavstcvpvaadnvivqnsmrissrpgacysrplvsfryedqgplvegqlgennelrltr
daiepctvghrryftfgggyvyfeeyayshqlsradittvstfidlnitmledhefvple
vytrheikdsglldytevqrrnqlhdlrfadidtvihadanaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4l1rB (B:)
dikaentdanfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkat
myykdvtvsqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnletta
fhrddhetdmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvy
pydefvlatgdfvymspfygyregshtehtsyaadrfkqvdgfyardlttkaratapttr
nllttpkftvawdwvpkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnltey
plsrvdlgdcigkdardamdrifarrynathikvgqpqyylanggfliayqpllsntlae
lyvrehlreqsrkppverikttssiefarlqftynhiqrhvndmlgrvaiawcelqnhel
tlwnearklnpntiasvtvgrrvsarmlgdvmavstcvpvaadnvivqnsmrissrpgac
ysrplvsfryedqgplvegqlgennelrltrdaiepctvghrryftfgggyvyfeeyays
hqlsradittvstfidlnitmledhefvplevytrheikdsglldytevqrrnqlhdlrf
adidtvih