PDB entry 4l1k

View 4l1k on RCSB PDB site
Description: Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with AMPPNP
Class: ligase
Keywords: ligase
Deposited on 2013-06-03, released 2014-02-19
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: d-alanine--d-alanine ligase
    Species: Xanthomonas oryzae pv. oryzae [TaxId:291331]
    Gene: ddl, ddlA, XOO0352
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5H614 (38-End)
      • see remark 999 (18-37)
      • engineered mutation (343)
    Domains in SCOPe 2.07: d4l1ka1, d4l1ka2
  • Heterogens: ANP, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4l1kA (A:)
hhhhhhhssenlyfqghmrkirvglifggksaehevslqsarnildaldpqrfepvligi
dkqgqwhvndpdsfllhaddparialhrsgrgvallpgaqqqqlrpiqpeqalaqidvvf
pivhgtlgedgslqgllrmanlpfvgsgvlgsavamdkdmakrvlrdarlavapfvcfdr
htaahadvdtliaqlglplfvkpanqgssvgvsqvrtadafaaalalalaydhkvlveaa
vagreiecavlgnavphasvcgevvvhdafysyatkyisehgaeivipadidaqtqqriq
qiavqayqalgcagmarvdvflcadgrivinevntlpgftrisvypklwqasgldyrgli
trlielalerhtddqllrsavelh

    Sequence, based on observed residues (ATOM records): (download) 
    >4l1kA (A:)
rkirvglifggksaehevslqsarnildaldpqrfepvligidkqgqwhvndpdsfllha
ddparialhrsgrgvallpgaqqqqlrpiqqalaqidvvfpivhgtlgedgslqgllrma
nlpfvgsgvlgsavamdkdmakrvlrdarlavapfvcfdrhtaahadvdtliaqlglplf
vkpanqgssvgvsqvrtadafaaalalalaydhkvlveaavagreiecavlgnavphasv
cgevvveivipadidaqtqqriqqiavqayqalgcagmarvdvflcadgrivinevntlp
gftrisvypklwqasgldyrglitrlielalerhtddqll