PDB entry 4koo

View 4koo on RCSB PDB site
Description: Crystal Structure of WHY1 from Arabidopsis thaliana
Class: DNA binding protein
Keywords: Plant, Whirly, SINGLE-STRANDED DNA BINDING PROTEIN, DNA BINDING PROTEIN
Deposited on 2013-05-12, released 2013-11-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 1.88 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Single-stranded DNA-binding protein WHY1, chloroplastic
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: At1g14410, F14L17.18, PTAC1, WHY1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9M9S3 (Start-168)
      • expression tag (169-179)
    Domains in SCOPe 2.08: d4kooa1, d4kooa2
  • Chain 'B':
    Compound: Single-stranded DNA-binding protein WHY1, chloroplastic
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: At1g14410, F14L17.18, PTAC1, WHY1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4koob_
  • Chain 'C':
    Compound: Single-stranded DNA-binding protein WHY1, chloroplastic
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: At1g14410, F14L17.18, PTAC1, WHY1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9M9S3 (Start-168)
      • expression tag (169)
    Domains in SCOPe 2.08: d4kooc1, d4kooc2
  • Chain 'D':
    Compound: Single-stranded DNA-binding protein WHY1, chloroplastic
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: At1g14410, F14L17.18, PTAC1, WHY1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9M9S3 (Start-168)
      • expression tag (169-178)
    Domains in SCOPe 2.08: d4kood1, d4kood2
  • Heterogens: MES, NI, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4kooA (A:)
maeglparfyvghsiykgkaaltvdprapefvaldsgafklskdgflllqfapsagvrqy
dwskkqvfslsvteigtlvslgpresceffhdpfkgksdegkvrkvlkveplpdgsghff
nlsvqnklvnvdesiyipitraefavlisafnfvlpyligwhafansikaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4kooA (A:)
lparfyvghsiykgkaaltvdprapefvaldsgafklskdgflllqfapsagvrqydwsk
kqvfslsvteigtlvslgpresceffhdpfkgksdegkvrkvlkveplpdgsghffnlsv
qnklvnvdesiyipitraefavlisafnfvlpyligwhafansikaaalehhhhhh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4kooB (B:)
maeglparfyvghsiykgkaaltvdprapefvaldsgafklskdgflllqfapsagvrqy
dwskkqvfslsvteigtlvslgpresceffhdpfkgksdegkvrkvlkveplpdgsghff
nlsvqnklvnvdesiyipitraefavlisafnfvlpyligwhafansikaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4kooB (B:)
parfyvghsiykgkaaltvdprapefvaldsgafklskdgflllqfapsagvrqydwskk
qvfslsvteigtlvslgpresceffhdpfkgksdegkvrkvlkveplpdgsghffnlsvq
nklvnvdesiyipitraefavlisafnfvlpyligwhafans

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4kooC (C:)
maeglparfyvghsiykgkaaltvdprapefvaldsgafklskdgflllqfapsagvrqy
dwskkqvfslsvteigtlvslgpresceffhdpfkgksdegkvrkvlkveplpdgsghff
nlsvqnklvnvdesiyipitraefavlisafnfvlpyligwhafansikaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4kooC (C:)
parfyvghsiykgkaaltvdprapefvaldsgafklskdgflllqfapsagvrqydwskk
qvfslsvteigtlvslgpresceffhdpfkgksdegkvrkvlkveplpdgsghffnlsvq
nklvnvdesiyipitraefavlisafnfvlpyligwhafansika

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4kooD (D:)
maeglparfyvghsiykgkaaltvdprapefvaldsgafklskdgflllqfapsagvrqy
dwskkqvfslsvteigtlvslgpresceffhdpfkgksdegkvrkvlkveplpdgsghff
nlsvqnklvnvdesiyipitraefavlisafnfvlpyligwhafansikaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4kooD (D:)
lparfyvghsiykgkaaltvdprapefvaldsgafklskdgflllqfapsagvrqydwsk
kqvfslsvteigtlvslgpresceffhdpfkgksdegkvrkvlkveplpdgsghffnlsv
qnklvnvdesiyipitraefavlisafnfvlpyligwhafansikaaalehhhhh