PDB entry 4ki4

View 4ki4 on RCSB PDB site
Description: Ternary complex of rb69 mutant L415F with ribonucleotides at 0 and -1 position
Class: transferase/DNA
Keywords: RIBONUCLEOTIDE, TRANSFERASE-DNA complex
Deposited on 2013-05-01, released 2013-10-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-10-30, with a file datestamp of 2013-10-25.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.193
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: Enterobacteria phage RB69 [TaxId:12353]
    Gene: 43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q38087 (0-End)
      • engineered mutation (221)
      • engineered mutation (326)
      • engineered mutation (414)
    Domains in SCOPe 2.08: d4ki4a1, d4ki4a2
  • Chain 'P':
    Compound: DNA (5'-d(*gp*cp*gp*gp*ap*cp*tp*gp*cp*tp*tp*ap*cp*c)-3')
  • Chain 'T':
    Compound: DNA/RNA (5'-d(*ap*c)-r(p*ap*g)-d(p*gp*tp*ap*ap*gp*cp*ap*gp*tp*cp*cp*gp*cp*g)-3')
  • Heterogens: TTP, CA, NA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4ki4A (A:)
    mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrk
    lfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtsp
    dgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevps
    eiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestak
    rlsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefelnv
    gklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfs
    piktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltsfypsii
    rqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfn
    qrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslne
    mlfraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierk
    vneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarerme
    paidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtry
    aepklkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisia
    svssanniakydvggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnp
    fgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdm
    fdf
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ki4A (A:)
    mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrk
    lfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtsp
    dgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevps
    eiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestak
    rlsphrktrvkvienmsreiitlfgisvldyidlykkfsftnqpsysldyisefelnvgk
    lkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfspi
    ktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltsfypsiirq
    vnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqr
    kehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslneml
    fraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvn
    eylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepa
    idrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryae
    pklkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasv
    ssanniakydvggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfg
    dkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmf
    

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.