PDB entry 4khy

View 4khy on RCSB PDB site
Description: Ternary complex of rb69 mutant L415F with ribonucleotide at -3 position
Class: transferase/DNA
Keywords: RIBONUCLEOTIDE, TRANSFERASE-DNA complex
Deposited on 2013-05-01, released 2013-10-09
The last revision prior to the SCOPe 2.03 freeze date was dated 2013-10-30, with a file datestamp of 2013-10-25.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.201
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: Enterobacteria phage RB69 [TaxId:12353]
    Gene: 43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q38087 (0-End)
      • engineered mutation (221)
      • engineered mutation (326)
      • engineered mutation (414)
    Domains in SCOPe 2.03: d4khya1, d4khya2
  • Chain 'P':
    Compound: DNA (5'-d(*gp*cp*gp*gp*ap*cp*tp*gp*cp*tp*tp*ap*cp*c)-3')
  • Chain 'T':
    Compound: DNA/RNA (5'-d(*ap*cp*ap*gp*g)-r(p*u)-d(p*ap*ap*gp*cp*ap*gp*tp*cp*cp*gp*cp*g)-3')
  • Heterogens: TTP, CA, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4khyA (A:)
mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrk
lfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtsp
dgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevps
eiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestak
rlsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefelnv
gklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfs
piktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltsfypsii
rqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfn
qrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslne
mlfraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierk
vneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarerme
paidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtry
aepklkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisia
svssanniakydvggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnp
fgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdm
fdf

    Sequence, based on observed residues (ATOM records): (download) 
    >4khyA (A:)
mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrk
lfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtsp
dgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevps
eiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestak
rlsphrktrvkviensreiitlfgisvldyidlykkfsftnqpsysldyisefelnvgkl
kydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfspik
twdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltsfypsiirqv
nispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrk
ehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlf
raqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvne
ylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepai
drgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaep
klkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvs
sanniakydvggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgd
kciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmfd

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.