PDB entry 4khu

View 4khu on RCSB PDB site
Description: Ternary complex of rb69 mutant L415F with a ribonucleotide at -1 position
Class: transferase/DNA
Keywords: RIBONUCLEOTIDE, TRANSFERASE-DNA complex
Deposited on 2013-05-01, released 2013-10-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-10-30, with a file datestamp of 2013-10-25.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.209
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: Enterobacteria phage RB69 [TaxId:12353]
    Gene: 43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q38087 (0-End)
      • engineered mutation (221)
      • engineered mutation (326)
      • engineered mutation (414)
    Domains in SCOPe 2.08: d4khua1, d4khua2
  • Chain 'P':
    Compound: DNA (5'-d(*gp*cp*gp*gp*ap*cp*tp*gp*cp*tp*tp*ap*cp*c)-3')
  • Chain 'T':
    Compound: DNA/RNA (5'-d(*ap*cp*a)-r(p*g)-d(p*gp*tp*ap*ap*gp*cp*ap*gp*tp*cp*cp*gp*cp*g)-3')
  • Heterogens: TTP, CA, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4khuA (A:)
mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrk
lfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtsp
dgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevps
eiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestak
rlsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefelnv
gklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfs
piktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltsfypsii
rqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfn
qrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslne
mlfraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierk
vneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarerme
paidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtry
aepklkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisia
svssanniakydvggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnp
fgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdm
fdf

    Sequence, based on observed residues (ATOM records): (download) 
    >4khuA (A:)
mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrk
lfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtsp
dgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevps
eiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestak
rlsphrktrvkviesreiitlfgisvldyidlykkfsftnqpsysldyisefelnvgklk
ydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfspikt
wdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltsfypsiirqvn
ispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrke
hkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfr
aqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvney
lnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaid
rgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepk
lkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvss
anniakydvggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdk
ciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmfd

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.