PDB entry 4kdm
View 4kdm on RCSB PDB site
Description: Crystal structure of the hemagglutinin of ferret-transmissible H5N1 virus
Class: viral protein
Keywords: homotrimer, virus attachment and membrane fusion, VIRAL PROTEIN
Deposited on
2013-04-25, released
2013-07-24
The last revision prior to the SCOPe 2.05 freeze date was dated
2014-10-29, with a file datestamp of
2014-10-24.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.217
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot Q6DQ33 (1-321)
- expression tag (0)
- engineered mutation (154)
- engineered mutation (220)
- engineered mutation (222)
- engineered mutation (315)
Domains in SCOPe 2.05: d4kdma_ - Chain 'B':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4kdmb_ - Chain 'C':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot Q6DQ33 (1-321)
- expression tag (0)
- engineered mutation (154)
- engineered mutation (220)
- engineered mutation (222)
- engineered mutation (315)
Domains in SCOPe 2.05: d4kdmc_ - Chain 'D':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4kdmd_ - Chain 'E':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot Q6DQ33 (1-321)
- expression tag (0)
- engineered mutation (154)
- engineered mutation (220)
- engineered mutation (222)
- engineered mutation (315)
Domains in SCOPe 2.05: d4kdme_ - Chain 'F':
Compound: Hemagglutinin
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4kdmf_ - Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdmA (A:)
qdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipk
sswssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlaiglrnsp
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdmB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisg
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdmC (C:)
qdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipk
sswssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlaiglrnsp
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdmD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisg
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdmE (E:)
qdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipk
sswssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlaiglrnsp
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>4kdmF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisg