PDB entry 4kdf

View 4kdf on RCSB PDB site
Description: Crystal Structure of Thermus thermophilus Malate Dehydrogenase in Complex with NAD
Class: Oxidoreductase
Keywords: Dehydrogenase, Oxidoreductase
Deposited on 2013-04-25, released 2014-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-02-05, with a file datestamp of 2014-01-31.
Experiment type: XRAY
Resolution: 2.36 Å
R-factor: 0.185
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: malate dehydrogenase
    Species: Thermus thermophilus [TaxId:274]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kdfa1, d4kdfa2
  • Chain 'B':
    Compound: malate dehydrogenase
    Species: Thermus thermophilus [TaxId:274]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kdfb1
  • Chain 'C':
    Compound: malate dehydrogenase
    Species: Thermus thermophilus [TaxId:274]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kdfc1
  • Chain 'D':
    Compound: malate dehydrogenase
    Species: Thermus thermophilus [TaxId:274]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kdfd1, d4kdfd2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4kdfA (A:)
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpkvafkdadyallvgaaprkagmerrdllqvngkifteqgralaeva
kkdvkvlvvgnpantnaliayknapglnprnftamtrldhnrakaqlakktgtgvdrirr
mtvwgnhsstmfpdlfhaevdgrpalelvdmewyekvfiptvaqrgaaiiqargassaas
aanaaiehirdwalgtpegdwvsmavpsqgeygipegivysfpvtakdgayrvveglein
efarkrmeitaqelldemeqvkalglirklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4kdfA (A:)
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpkvafkdadyallvgaapllqvngkifteqgralaevakkdvkvlvv
gnpantnaliayknapglnprnftamtrldhnrakaqlakktgtgvdrirrmtvwgnhss
tmfpdlfhaevdgrpalelvdmewyekvfiptvaqrgaaiiqargassaasaanaaiehi
rdwalgtpegdwvsmavpsqgeygipegivysfpvtakdgayrvvegleinefarkrmei
taqelldemeqvkalgl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4kdfB (B:)
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpkvafkdadyallvgaaprkagmerrdllqvngkifteqgralaeva
kkdvkvlvvgnpantnaliayknapglnprnftamtrldhnrakaqlakktgtgvdrirr
mtvwgnhsstmfpdlfhaevdgrpalelvdmewyekvfiptvaqrgaaiiqargassaas
aanaaiehirdwalgtpegdwvsmavpsqgeygipegivysfpvtakdgayrvveglein
efarkrmeitaqelldemeqvkalglirklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4kdfB (B:)
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpkvafkdadyallvgaapllqvngkifteqgralaevakkdvkvlvv
gnpantnaliayknapglnprnftamtrldhnrakaqlakktgtgvdrirrmtvwgnhss
tmfpdlfhaevdgrpalelvdmewyekvfiptvaqrgaaiiqargassaasaanaaiehi
rdwalgtpegdwvsmavpsqgeygipegivysfpvtakdgayrvvegleinefarkrmei
taqelldemeqvkalgl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4kdfC (C:)
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpkvafkdadyallvgaaprkagmerrdllqvngkifteqgralaeva
kkdvkvlvvgnpantnaliayknapglnprnftamtrldhnrakaqlakktgtgvdrirr
mtvwgnhsstmfpdlfhaevdgrpalelvdmewyekvfiptvaqrgaaiiqargassaas
aanaaiehirdwalgtpegdwvsmavpsqgeygipegivysfpvtakdgayrvveglein
efarkrmeitaqelldemeqvkalglirklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4kdfC (C:)
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpkvafkdadyallvgaaprllqvngkifteqgralaevakkdvkvlv
vgnpantnaliayknapglnprnftamtrldhnrakaqlakktgtgvdrirrmtvwgnhs
stmfpdlfhaevdgrpalelvdmewyekvfiptvaqrgaaiiqargassaasaanaaieh
irdwalgtpegdwvsmavpsqgeygipegivysfpvtakdgayrvvegleinefarkrme
itaqelldemeqvkalgl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4kdfD (D:)
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpkvafkdadyallvgaaprkagmerrdllqvngkifteqgralaeva
kkdvkvlvvgnpantnaliayknapglnprnftamtrldhnrakaqlakktgtgvdrirr
mtvwgnhsstmfpdlfhaevdgrpalelvdmewyekvfiptvaqrgaaiiqargassaas
aanaaiehirdwalgtpegdwvsmavpsqgeygipegivysfpvtakdgayrvveglein
efarkrmeitaqelldemeqvkalglirklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4kdfD (D:)
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpkvafkdadyallvgaaprllqvngkifteqgralaevakkdvkvlv
vgnpantnaliayknapglnprnftamtrldhnrakaqlakktgtgvdrirrmtvwgnhs
stmfpdlfhaevdgrpalelvdmewyekvfiptvaqrgaaiiqargassaasaanaaieh
irdwalgtpegdwvsmavpsqgeygipegivysfpvtakdgayrvvegleinefarkrme
itaqelldemeqvkalgl