PDB entry 4kd5

View 4kd5 on RCSB PDB site
Description: substrate binding domain of putative molybdenum ABC transporter from Clostridium difficile
Class: transport protein
Keywords: Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious Diseases, CSGID, alpha-beta-alpha fold, ABC transporter, TRANSPORT PROTEIN
Deposited on 2013-04-24, released 2013-05-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ABC-type transport system, molybdenum-specific extracellular solute-binding protein
    Species: Clostridium difficile [TaxId:272563]
    Gene: CD630_08690, modA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kd5a_
  • Chain 'B':
    Compound: ABC-type transport system, molybdenum-specific extracellular solute-binding protein
    Species: Clostridium difficile [TaxId:272563]
    Gene: CD630_08690, modA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kd5b_
  • Chain 'C':
    Compound: ABC-type transport system, molybdenum-specific extracellular solute-binding protein
    Species: Clostridium difficile [TaxId:272563]
    Gene: CD630_08690, modA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kd5c_
  • Chain 'D':
    Compound: ABC-type transport system, molybdenum-specific extracellular solute-binding protein
    Species: Clostridium difficile [TaxId:272563]
    Gene: CD630_08690, modA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kd5d_
  • Heterogens: FMT, SBT, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4kd5A (A:)
snadsvelnisaaaslkeamakieeeykkvdsnvkltvnygasgslqqqieqgapcdlfi
sagqkqmkvldeekllvsdtmkdlvkndlvlissadssvsgmkdlttdkvkkiavgeaes
vpagkyadevltnlnlkdklkdklvfakdvkevlawvqsgnadvgfvyfsdtvnndkikv
vektdekthspitypvsvikasknvdaakkfeefllsesgqkifeefgykkve

    Sequence, based on observed residues (ATOM records): (download) 
    >4kd5A (A:)
svelnisaaaslkeamakieeeykkvdsnvkltvnygasgslqqqieqgapcdlfisagq
kqmkvldeekllvsdtmkdlvkndlvlissadssvsgmkdlttdkvkkiavgeaesvpag
kyadevltnlnlkdklkdklvfakdvkevlawvqsgnadvgfvyfsdtvnndkikvvekt
dekthspitypvsvikasknvdaakkfeefllsesgqkifeefgykkve

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4kd5B (B:)
snadsvelnisaaaslkeamakieeeykkvdsnvkltvnygasgslqqqieqgapcdlfi
sagqkqmkvldeekllvsdtmkdlvkndlvlissadssvsgmkdlttdkvkkiavgeaes
vpagkyadevltnlnlkdklkdklvfakdvkevlawvqsgnadvgfvyfsdtvnndkikv
vektdekthspitypvsvikasknvdaakkfeefllsesgqkifeefgykkve

    Sequence, based on observed residues (ATOM records): (download) 
    >4kd5B (B:)
svelnisaaaslkeamakieeeykkvdsnvkltvnygasgslqqqieqgapcdlfisagq
kqmkvldeekllvsdtmkdlvkndlvlissadssvsgmkdlttdkvkkiavgeaesvpag
kyadevltnlnlkdklkdklvfakdvkevlawvqsgnadvgfvyfsdtvnndkikvvekt
dekthspitypvsvikasknvdaakkfeefllsesgqkifeefgykkv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4kd5C (C:)
snadsvelnisaaaslkeamakieeeykkvdsnvkltvnygasgslqqqieqgapcdlfi
sagqkqmkvldeekllvsdtmkdlvkndlvlissadssvsgmkdlttdkvkkiavgeaes
vpagkyadevltnlnlkdklkdklvfakdvkevlawvqsgnadvgfvyfsdtvnndkikv
vektdekthspitypvsvikasknvdaakkfeefllsesgqkifeefgykkve

    Sequence, based on observed residues (ATOM records): (download) 
    >4kd5C (C:)
svelnisaaaslkeamakieeeykkvdsnvkltvnygasgslqqqieqgapcdlfisagq
kqmkvldeekllvsdtmkdlvkndlvlissadssvsgmkdlttdkvkkiavgeaesvpag
kyadevltnlnlkdklkdklvfakdvkevlawvqsgnadvgfvyfsdtvnndkikvvekt
dekthspitypvsvikasknvdaakkfeefllsesgqkifeefgykkve

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4kd5D (D:)
snadsvelnisaaaslkeamakieeeykkvdsnvkltvnygasgslqqqieqgapcdlfi
sagqkqmkvldeekllvsdtmkdlvkndlvlissadssvsgmkdlttdkvkkiavgeaes
vpagkyadevltnlnlkdklkdklvfakdvkevlawvqsgnadvgfvyfsdtvnndkikv
vektdekthspitypvsvikasknvdaakkfeefllsesgqkifeefgykkve

    Sequence, based on observed residues (ATOM records): (download) 
    >4kd5D (D:)
velnisaaaslkeamakieeeykkvdsnvkltvnygasgslqqqieqgapcdlfisagqk
qmkvldeekllvsdtmkdlvkndlvlissadssvsgmkdlttdkvkkiavgeaesvpagk
yadevltnlnlkdklkdklvfakdvkevlawvqsgnadvgfvyfsdtvnndkikvvektd
ekthspitypvsvikasknvdaakkfeefllsesgqkifeefgykkv