PDB entry 4kb1

View 4kb1 on RCSB PDB site
Description: Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT )
Class: Hydrolase/dna
Keywords: DnaQ, DEDD, exonuclease, DNA repair, Hydrolase-dna complex
Deposited on 2013-04-23, released 2014-03-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-05-28, with a file datestamp of 2014-05-23.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.184
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonuclease T
    Species: Escherichia coli [TaxId:83333]
    Gene: b1652, JW1644, rnt
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kb1a_
  • Chain 'B':
    Compound: Ribonuclease T
    Species: Escherichia coli [TaxId:83333]
    Gene: b1652, JW1644, rnt
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4kb1b_
  • Chain 'C':
    Compound: Bulge DNA
  • Chain 'D':
    Compound: Bulge DNA
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4kb1A (A:)
mgsshhhhhhssglvprgshmsdnaqltglcdrfrgfypvvidvetagfnaktdalleia
aitlkmdeqgwlmpdttlhfhvepfvganlqpealafngidpndpdrgavseyealheif
kvvrkgikasgcnraimvahnanfdhsfmmaaaeraslkrnpfhpfatfdtaalaglalg
qtvlskacqtagmdfdstqahsalydtertavlfceivnrwkrlggwplsaaeev

    Sequence, based on observed residues (ATOM records): (download) 
    >4kb1A (A:)
tglcdrfrgfypvvidvetagfnaktdalleiaaitlkmdeqgwlmpdttlhfhvepfvg
anlqpealafngidpndpdrgavseyealheifkvvrkgikasgcnraimvahnanfdhs
fmmaaaeraslkrnpfhpfatfdtaalaglalgqtvlskacqtagmdfdstqahsalydt
ertavlfceivnrwkrlggwplsaaeev

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4kb1B (B:)
mgsshhhhhhssglvprgshmsdnaqltglcdrfrgfypvvidvetagfnaktdalleia
aitlkmdeqgwlmpdttlhfhvepfvganlqpealafngidpndpdrgavseyealheif
kvvrkgikasgcnraimvahnanfdhsfmmaaaeraslkrnpfhpfatfdtaalaglalg
qtvlskacqtagmdfdstqahsalydtertavlfceivnrwkrlggwplsaaeev

    Sequence, based on observed residues (ATOM records): (download) 
    >4kb1B (B:)
ltglcdrfrgfypvvidvetagfnaktdalleiaaitlkmdeqgwlmpdttlhfhvepfv
ganlqpealafngidpndpdrgavseyealheifkvvrkgikasgcnraimvahnanfdh
sfmmaaaeraslkrnpfhpfatfdtaalaglalgqtvlskacqtagmdfdstqahsalyd
tertavlfceivnrwkrlggwplsa

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.