PDB entry 4k66

View 4k66 on RCSB PDB site
Description: Structure of an airborne transmissible avian influenza H5 hemagglutinin mutant from the influenza virus A/Indonesia/5/2005 complexed with avian receptor analog LSTa
Class: viral protein
Keywords: virus attachment, membrane fusion, VIRAL PROTEIN
Deposited on 2013-04-15, released 2013-05-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-05-29, with a file datestamp of 2013-05-24.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.221
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A8HWY8 (1-320)
      • expression tag (0)
      • engineered mutation (103)
      • engineered mutation (156)
      • engineered mutation (222)
      • engineered mutation (224)
    Domains in SCOPe 2.07: d4k66a1, d4k66a2
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4k66b_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A8HWY8 (1-320)
      • expression tag (0)
      • engineered mutation (103)
      • engineered mutation (156)
      • engineered mutation (222)
      • engineered mutation (224)
    Domains in SCOPe 2.07: d4k66c1, d4k66c2
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4k66d_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A8HWY8 (1-320)
      • expression tag (0)
      • engineered mutation (103)
      • engineered mutation (156)
      • engineered mutation (222)
      • engineered mutation (224)
    Domains in SCOPe 2.07: d4k66e1, d4k66e2
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4k66f_
  • Chain 'G':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A8HWY8 (1-320)
      • expression tag (0)
      • engineered mutation (103)
      • engineered mutation (156)
      • engineered mutation (222)
      • engineered mutation (224)
    Domains in SCOPe 2.07: d4k66g1, d4k66g2
  • Chain 'H':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:400788]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4k66h_
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k66A (A:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkyllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknsayptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvnglssrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k66B (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesirngtynypqyse

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k66C (C:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkyllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknsayptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvnglssrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k66D (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesirngtynypqyse

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k66E (E:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkyllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknsayptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvnglssrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k66F (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesirngtynypqyse

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k66G (G:)
qdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanptndlcypgsfndyeelkyllsrinhfekiqiipk
sswsdheassgvssacpylgspsffrnvvwlikknsayptikksynntnqedllvlwgih
hpndaaeqtrlyqnpttyisigtstlnqrlvpkiatrskvnglssrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrns

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k66H (H:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesirngtynypqyse