PDB entry 4k4b

View 4k4b on RCSB PDB site
Description: X-ray crystal structure of E. coli YdiI complexed with undeca-2-one-CoA
Class: hydrolase
Keywords: Hotdog fold, thioesterase, hydrolase
Deposited on 2013-04-12, released 2014-07-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-08-20, with a file datestamp of 2014-08-15.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.171
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Esterase YdiI
    Species: Escherichia coli [TaxId:83333]
    Gene: b1686, JW1676, ydiI, YdiL
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k4ba_
  • Chain 'B':
    Compound: Esterase YdiI
    Species: Escherichia coli [TaxId:83333]
    Gene: b1686, JW1676, ydiI, YdiL
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k4bb_
  • Chain 'C':
    Compound: Esterase YdiI
    Species: Escherichia coli [TaxId:83333]
    Gene: b1686, JW1676, ydiI, YdiL
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k4bc_
  • Chain 'D':
    Compound: Esterase YdiI
    Species: Escherichia coli [TaxId:83333]
    Gene: b1686, JW1676, ydiI, YdiL
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k4bd_
  • Chain 'E':
    Compound: Esterase YdiI
    Species: Escherichia coli [TaxId:83333]
    Gene: b1686, JW1676, ydiI, YdiL
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k4be_
  • Chain 'F':
    Compound: Esterase YdiI
    Species: Escherichia coli [TaxId:83333]
    Gene: b1686, JW1676, ydiI, YdiL
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k4bf_
  • Chain 'G':
    Compound: Esterase YdiI
    Species: Escherichia coli [TaxId:83333]
    Gene: b1686, JW1676, ydiI, YdiL
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k4bg_
  • Chain 'H':
    Compound: Esterase YdiI
    Species: Escherichia coli [TaxId:83333]
    Gene: b1686, JW1676, ydiI, YdiL
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k4bh_
  • Heterogens: UOQ, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k4bA (A:)
miwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasvv
laesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieifd
ekgrlccssrlttail

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k4bB (B:)
miwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasvv
laesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieifd
ekgrlccssrlttail

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k4bC (C:)
miwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasvv
laesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieifd
ekgrlccssrlttail

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k4bD (D:)
miwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasvv
laesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieifd
ekgrlccssrlttail

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k4bE (E:)
miwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasvv
laesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieifd
ekgrlccssrlttail

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k4bF (F:)
miwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasvv
laesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieifd
ekgrlccssrlttail

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k4bG (G:)
miwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasvv
laesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieifd
ekgrlccssrlttail

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4k4bH (H:)
miwkrkitlealnamgegnmvgfldirfehigddtleatmpvdsrtkqpfgllhggasvv
laesigsvagylctegeqkvvgleinanhvrsaregrvrgvckplhlgsrhqvwqieifd
ekgrlccssrlttail